- pdf_highlighter.compute_chunk_bboxes_batch: drop unused chunk_text
destructure (SonarQube finding), and replace positional
page_boundaries[page_num - 1] with a key-based next() match so
reordered or non-1-indexed boundaries can't silently shift the bbox.
Convert touched f-string log to lazy %s formatting.
- vector/processor: rename the trace_operation span from
"vector_sync.generate_highlights" to "vector_sync.compute_chunk_bboxes"
to match what the function actually does.
- Add test_compute_chunk_bboxes_handles_unordered_page_boundaries —
reverses the boundaries list and asserts identical results to the
in-order case, guarding the boundary-lookup regression class.
- Pin pre-push-review skill to sonnet model.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- chunk_bboxes is now dict[int, list[tuple[...]]] holding the bbox list
directly, not {"bbox": ..., "page": ...}. The page from text-search was
stored but never read; page_number from offset-based assignment is
authoritative for the Qdrant payload.
- Add two unit tests for the documented omission contract: chunks whose
offsets fall outside every page boundary, and chunks whose text cannot
be located on the rendered page, are silently dropped from the result.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- Drop chunk_bbox_page from Qdrant payload — viz endpoints never read it
(page_number is the canonical PDF page field).
- Bump upsert BATCH_SIZE 10 → 100 now that payloads no longer carry PNGs.
- compute_chunk_bboxes_batch: move doc.close() into finally, replace
unused stored_page_num with _.
- purge_page_images.py: switch to anyio.run() per project convention,
and wrap AsyncQdrantClient in try/finally so the aiohttp session is
always closed (the class doesn't implement async-context-manager).
- Decorate new bbox unit tests with @pytest.mark.unit so they run under
the fast-feedback selector.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Per-chunk PDF page renders (~150–700 KB base64 PNG each) were the dominant
disk consumer in production, repeatedly tripping `No space left on device:
WAL buffer size exceeds available disk space` on welcomed-malamute Qdrant.
Replace the inline highlighted_page_image / highlighted_page_number /
highlight_count fields with a small `chunk_bbox` field:
list[(x0, y0, x1, y1)] of normalized [0, 1] floats, ~32 bytes per chunk.
Astrolabe (the only known consumer) renders the highlight client-side as
a percentage-positioned overlay on top of the existing /api/v1/pdf-preview
render-on-demand path (cbcoutinho/astrolabe#76).
- pdf_highlighter: new compute_chunk_bboxes_batch() that reuses the
existing _find_chunk_bbox text-search path, skipping all pixmap/PIL/PNG
work.
- processor: store chunk_bbox + chunk_bbox_page in the Qdrant payload,
drop highlighted_page_image + friends, drop the base64 import.
- visualization /api/v1/chunk-context and auth/viz_routes: read
chunk_bbox instead of highlighted_page_image.
- vector/__init__: stop eagerly re-exporting `processor`/`scanner` —
fixes a pre-existing circular import (search.algorithms ->
vector.placeholder -> vector/__init__ -> processor -> scanner ->
server.semantic -> search.bm25_hybrid -> search.algorithms partial).
Test suite that was broken on master (test_bm25_hybrid.py et al.) now
collects and passes.
- scripts/purge_page_images.py: ad-hoc, idempotent migration that
delete_payload's the legacy keys from existing points. No reindex
required; legacy chunks render the page with no overlay.
Pairs with cbcoutinho/astrolabe#76. Frontend handles missing chunk_bbox
gracefully, so this can land in either order.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
NextcloudClient.find_files_by_tag now mirrors the directory semantics
already used by the exclusion path (issue #710): when a tagged item is
a folder, walk its descendants via WebDAV SEARCH (Depth: infinity) and
include any files matching the MIME filter. Without this, tagging the
root of a corpus with `vector-index` indexed nothing because the tag
applies to the directory only, not to its children.
The vector scanner additionally consults EXCLUDED_TAGS now, so a folder
marked off-limits is skipped even if it (or an ancestor) carries the
include tag — defense-in-depth, matching the "exclusion wins" contract
already enforced by the MCP file tools.
Also addressed a recurring memory-style nit: pre-existing f-string log
lines in find_files_by_tag were converted to lazy %-style.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Closes out the remaining nits flagged in the round-6 review.
Critical:
- _verify_files contract comment now enumerates all None-return cases
(404 + malformed PROPFIND XML) and documents the false-eviction
trade-off; self-healing via re-indexing recovers
- int(r.id) cast at the SemanticSearchResult boundary now raises a
TypeError with explicit doc_type/value context instead of bubbling
up as an opaque "Search failed: ..." McpError
Design observations:
- nc_semantic_search_answer docstring documents the per-note
round-trip cost from the post-verification race guard
- News verification latency hint added to configuration.md
- SemanticSearchResponse exposes verified_count + dropped_count so
short result pages on high-ghost-density indexes are
distinguishable from genuine scarcity. verify_search_results now
returns (kept, dropped_count); production caller and tests updated
Minor:
- Comment clarifies the .get() fallback in verify_search_results is
defensive only (run_verifier always populates the entry)
- Eviction task-group guard narrowed from except Exception to
except RuntimeError (the only documented failure mode of
TaskGroup.start_soon on a closed group)
- Indexer logs a warning when a deck_card task is missing
board_id/stack_id, surfacing data-quality issues at index time
rather than at verification time
- New unit test covers the news verifier's non-numeric-id fail-open
path (one bad doc_id keeps the entire batch)
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Implements fire-and-forget eviction (ADR-019 §"Lazy eviction"): the
search response no longer waits on Qdrant deletes, instead spawning
evict() on a long-lived lifespan-owned task group. Falls back to inline
eviction in modes without vector sync and in unit tests.
Also: harden _verify_news_items against non-numeric ids (fail open
instead of crashing the verifier); document the get_file_info None-on-404
contract; add INDEXED_DOC_TYPES single source of truth in vector/scanner.py
referenced by the CI-guard test; write a Verify-on-Read Latency Budget
section in docs/configuration.md covering the unbounded news.get_items
fetch. Closes the two remaining ADR-019 implementation checklist items.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
The vector index lags Nextcloud (5-min webhook cron + scanner interval),
producing ghost records for deleted/unshared documents until the next
reconciliation. Verify each unique document against Nextcloud at query
time, drop inaccessible results, and lazily evict the corresponding
Qdrant points.
Per-doc_type batch verifiers: notes/files/deck cards run concurrently
per id; news items use a single fetch + intersect to avoid the per-item
fetch-all amplification. Transient errors fail open (keep result, log
warning) — only definitive 4xx drops. Multiple chunks of the same doc
collapse to one verification call.
Wired into nc_semantic_search before the limit trim and before context
expansion. nc_semantic_search_answer's per-note re-fetch retained as a
sub-second race guard since verification now happens upstream.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Address round-5 reviewer feedback on PR #747:
- Escape `webhook_uri` in the admin pane HTML template so an operator-
controlled env value (`WEBHOOK_INTERNAL_URL`, `NEXTCLOUD_MCP_SERVER_URL`)
can't inject markup. The sibling `preset_id` and exception messages were
already escaped — this one was the odd one out.
- Convert the eight remaining f-string `logger.warning`/`logger.error`
calls in `api/webhooks.py` to lazy `%s` formatting, matching the style
already adopted by `webhook_receiver.py` and `webhook_routes.py`.
- Document why the 401 from `handle_nextcloud_webhook` deliberately omits
`WWW-Authenticate`: NC's webhook delivery worker has no auth-flow state
machine to negotiate against, the bearer is a static shared secret
configured out-of-band via `WEBHOOK_SECRET`, and a challenge response
wouldn't change client behaviour. The existing warning log already
records the rejection.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Address the two Security findings from PR review:
- webhook_receiver: encode Authorization header and expected bearer to
utf-8 bytes before hmac.compare_digest. Conventional form; doesn't
rely on Python's implicit ASCII encoding.
- webhook_routes: html.escape user-influenced and exception-derived
strings before interpolating into HTMLResponse content. Covers the
preset_id path param echoed in the "Unknown preset" branch and the
str(e) text rendered on handler exceptions.
Adds regression tests verifying compare_digest is invoked on bytes and
that <script> payloads (in preset_id and exception messages) are
emitted as escaped entities, not active markup.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Addresses round-3 review feedback on PR #747:
- webhook_receiver: wrap send_stream.send() in anyio.fail_after(1.0)
and return 503 with reason="queue full" if the queue is saturated.
Avoids pinning the handler until NC's outbound timeout fires; the
503 retry contract is the same as the existing "sync not running"
branch.
- webhook_receiver: revise the compare_digest comment to match what
the function actually guarantees — it avoids the per-character
short-circuit of `==` but is not fully constant-time across length
differences.
- _get_webhook_uri: read WEBHOOK_INTERNAL_URL and
NEXTCLOUD_MCP_SERVER_URL via dynaconf so operators using
settings.toml (rather than env vars) aren't silently routed into
the docker/localhost fallback. Adds webhook_internal_url to
Settings/_DEFAULTS/_field_map; nextcloud_mcp_server_url already
existed. Docker-detection markers stay on os.getenv since they're
container-runtime signals, not user-facing config.
- webhook_routes: sweep remaining f-string logger calls to lazy %s
formatting per CLAUDE.md.
- client/webhooks: modernise full file's type hints to
dict / list / | None per CLAUDE.md.
Tests:
- New test_returns_503_when_queue_is_full exercises the timeout
branch with a saturated buffer and a shortened deadline.
- test_webhook_uri tests now patch get_settings (matching the
auth-pair tests in the same file) instead of monkeypatching env
vars directly.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
- webhook_receiver: always run hmac.compare_digest (drop the
`not provided or` short-circuit) so the constant-time path is
taken regardless of whether the Authorization header is present.
- client/webhooks: modernise the new `auth_data` type hint to
`dict[str, str] | None` per CLAUDE.md.
- tests/client: rename `test_create_webhook_with_auth_headers` →
`test_create_webhook_with_static_headers` and use
`auth_method="header"` (NC's webhook_listeners only supports
"none" and "header"; the previous "bearer" value was invalid).
- auth/webhook_routes: extract `_register_preset_webhooks` from
`enable_webhook_preset` so the auth-threading behaviour is
testable without standing up a Starlette app + auth middleware.
- tests/unit: new test_webhook_routes_register covering the helper
with secret set / unset, and verifying ids round-trip in order.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Adds optional shared-secret authentication for /webhooks/nextcloud,
addressing the security follow-up flagged in #747.
Behavior:
- WEBHOOK_SECRET set: registrations pass authMethod="header" with
authData={"Authorization": "Bearer <secret>"} (encrypted at-rest in
Nextcloud's DB and forwarded on every delivery). The receiver
validates the same header with hmac.compare_digest before parsing
any payload; missing/invalid → 401.
- WEBHOOK_SECRET unset: registrations stay on authMethod="none" and
the receiver accepts unauthenticated POSTs (logging a one-time
startup warning). Backward compatible — operators can roll out at
their own pace.
Implementation notes:
- WebhooksClient.create_webhook gains an `auth_data` parameter mapped
to NC's `authData` body field; this is distinct from the existing
`headers` parameter (`headers` is plaintext static request headers,
`authData` is encrypted at-rest in NC and only emitted when
authMethod="header"). The previous `auth_method="bearer"` mention in
the docstring was incorrect — NC supports only "none" and "header".
- A small `webhook_auth_pair()` helper in auth/webhook_routes.py
centralises the secret→(auth_method, auth_data) resolution so the
preset flow and the Astrolabe-facing /api/v1/webhooks endpoint stay
in sync.
Also addresses the smaller review points from #747:
- f-string → lazy %s formatting in webhook_receiver.py and
webhook_routes.py.
- Move `int(time)` inside webhook_parser's try/except so a malformed
`time` field returns None instead of raising ValueError.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
The /webhooks/nextcloud endpoint was a no-op stub that logged the
payload and returned 200 OK; webhook deletions never reached Qdrant.
Compounding that, _get_webhook_uri() registered the docker-compose
internal hostname (http://mcp:8000) with Nextcloud whenever
/.dockerenv existed — including ECS Fargate — so cloud deployments
were registering a URL NC could not resolve.
- New vector/webhook_parser.py extracts a DocumentTask from
NodeCreatedEvent / NodeWrittenEvent / BeforeNodeDeletedEvent
payloads scoped to */files/Notes/*.md (matching the registered
preset filters).
- New vector/webhook_receiver.py pushes that task onto the same
send-stream the scanner uses (app.state.document_send_stream),
with 503 when sync is not running so NC retries delivery.
- _get_webhook_uri() now prefers NEXTCLOUD_MCP_SERVER_URL over the
/.dockerenv branch, so the explicit public URL set on cloud tasks
wins; docker-compose dev still falls back to the internal name when
no public URL is configured.
Calendar / Tables event parsing is intentionally out of scope here.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
caldav 3.x lists niquests as a mandatory dependency and prefers it over
httpx. Passing httpx.BasicAuth via the auth= argument breaks under the
niquests backend with "Unexpected non-callable authentication" — see #731.
Switch CalendarClient.__init__ from auth=Auth|None to keyword-only
password/token, and forward them to AsyncDAVClient as password= plus an
explicit auth_type ("basic" or "bearer"). caldav then builds whichever
auth object its active backend needs (niquests.auth.HTTPBasicAuth or
httpx.BasicAuth), so we stay backend-agnostic.
Threaded raw credentials through NextcloudClient — added keyword-only
password/token to its __init__, and updated from_env, from_token, and
the four call sites that build NextcloudClient (context.py basic-auth
and Login Flow paths, auth/userinfo_routes.py, vector/oauth_sync.py).
Four new unit tests pin the construction wiring so the niquests
regression can't recur silently — basic, bearer, no-creds, and
password-precedence cases.
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Many identity providers (AWS Cognito, Okta, Azure AD) reject or mishandle
colons in OAuth scope names. This migrates all custom scopes from
`resource:action` to `resource.action` format (e.g., `notes:read` →
`notes.read`), which is universally accepted and aligns with industry
conventions (Microsoft, Google).
Includes Alembic migration 004 for stored scope strings and ADR-024
documenting the rationale and RFC references.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Login Flow v2 is a deployment-wide mode where all users authenticate
with app passwords (not OAuth refresh tokens). Set use_basic_auth=True
when enable_login_flow is true so the background sync user manager
queries the app_passwords table and scanners use app password
authentication for Nextcloud API calls.
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
When enable_login_flow is true, also check the app_passwords table
for provisioned users. Previously, OAuth mode only queried the
refresh_tokens table, missing users who were provisioned via
Login Flow v2 (which stores app passwords, not refresh tokens).
Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
Enable ruff PLC0415 rule for all source files (tests excluded via
per-file-ignores). Move 136 inline imports to top-level across 33 files.
8 imports suppressed with noqa for legitimate reasons: circular
dependencies (client/__init__.py, context.py), optional dependency
guards (app.py document processors, auth/userinfo_routes.py), and
post-env-setup imports (smithery_main.py).
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
- Move httpx import to top-level and use anyio task group for concurrent
validation in cleanup_invalid_app_passwords (storage.py)
- Respect Retry-After header for 429 responses, capped at 300s (oauth_sync.py)
- Soften pre-validation exceptions so transient failures don't crash the
background sync task (oauth_sync.py)
- Replace f-string SQL with blanket DELETE and add returncode checks (conftest.py)
- Extract clear_stale_test_state() helper to deduplicate cleanup logic
in astrolabe background sync tests
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
The revoke test failed because it only completed Step 2 (app password) but
not Step 1 (OAuth authorization). In hybrid mode, Astrolabe requires both
steps for $isFullyConfigured=true, which gates the "Revoke Access" button.
Changes:
- Use complete_astrolabe_authorization() in revoke test for full two-step flow
- Add stale state cleanup (app passwords, bruteforce entries, Astrolabe prefs)
to both enablement and revoke tests
- Add startup cleanup of invalid app passwords in BasicAuth mode
- Pre-validate credentials before entering scanner loop to fail fast
- Handle 401/403/429 in scanner with proper backoff and circuit breaking
- Clean up app passwords in test_users_setup fixture teardown
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Previously, the multi-user BasicAuth mode attempted to retrieve app passwords
via OAuth client_credentials grant, which Nextcloud OIDC doesn't support.
This fix implements local storage for app passwords:
- Add app_passwords table via Alembic migration (002)
- Add store/get/delete methods to RefreshTokenStorage
- Add management API endpoints for app password provisioning:
- POST /api/v1/users/{user_id}/app-password
- GET /api/v1/users/{user_id}/app-password
- DELETE /api/v1/users/{user_id}/app-password
- Update oauth_sync.py to read from local storage
- Update Astrolabe to send app passwords to MCP server after validation
- Add app-hook to configure mcp_server_url in Nextcloud
The flow is now:
1. User creates app password in Nextcloud Security settings
2. User enters it in Astrolabe Personal Settings
3. Astrolabe validates against Nextcloud, then sends to MCP server
4. MCP server stores encrypted app password locally
5. Background sync uses locally stored password
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Completely separates multi-user BasicAuth mode from OAuth mode with no
fallback between them. These are now mutually exclusive authentication
strategies based on deployment configuration.
Changes:
- Create separate functions: get_user_client_basic_auth() and
get_user_client_oauth() with clear separation of concerns
- Update get_user_client() to dispatch based on use_basic_auth parameter
- Pass use_basic_auth through all background sync tasks
- Update app.py to determine auth mode at startup
- Rewrite integration tests to verify no OAuth fallback in BasicAuth mode
- Fix test assertions for response field names and duplicate title handling
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Implement multi-user BasicAuth pass-through mode (ADR-020) where each
request includes BasicAuth credentials that are forwarded to Nextcloud
APIs without persistent storage.
Changes:
- Add _get_client_from_basic_auth() in context.py to extract credentials
from Authorization header (set by BasicAuthMiddleware)
- Add AstrolabeClient for app password provisioning via Astrolabe API
- Update oauth_sync.py with dual credential support (app passwords first,
then refresh tokens as fallback)
- Simplify oauth_tools.py provisioning logic
- Add integration tests for app password provisioning and multi-user BasicAuth
Features:
- Stateless multi-user mode: credentials passed per-request
- Optional background sync via app passwords (stored in Astrolabe)
- Falls back to refresh tokens if app password not available
- Test coverage for provisioning flow and pass-through mode
Related: ADR-019 (Multi-user BasicAuth), ADR-020 (Deployment Modes)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Add type casts for Starlette app state access
- Add assertions for cipher, card, board, stack after initialization
- Add None checks for XML element text attributes
- Handle __package__ being None in tracing setup
- Fix TokenBrokerService initialization to use storage credentials
Resolves 42 type warnings from ty-check, enabling CI linting to pass.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
- Add Plotly.js 3D scatter plot showing search results in PCA space
- Create shared visualization.py module to avoid code duplication
- Pass include_pca parameter through API chain to enable coordinates
- Fix OAuth redirects to use /settings/user/astroglobe
The visualization shows document embeddings projected to 3D via PCA,
with the query point highlighted in red. Uses Viridis colorscale
for score visualization, matching the existing vector-viz page.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Addresses reviewer feedback on PR #395 about O(n²) performance issue.
Changes:
- scanner.py: Add metadata field to DocumentTask with board_id/stack_id
- scanner.py: Populate metadata during deck card scanning (both initial and incremental sync)
- processor.py: Use metadata for O(1) card lookup via get_card() API when available
- processor.py: Fallback to iteration for legacy data without metadata
- context.py: Add _get_deck_metadata_from_qdrant() helper to retrieve metadata from Qdrant
- context.py: Use metadata for fast path lookup in chunk context expansion
- context.py: Add user_id parameter to _fetch_document_text() for metadata retrieval
Performance Impact:
- Before: O(boards × stacks × cards) iteration for each card lookup
- After: O(1) direct API call using stored board_id/stack_id
- Graceful degradation: Falls back to iteration for legacy data
Testing:
- All existing integration tests pass (test_deck_vector_search.py)
- Type checking passes with no new errors
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Adds comprehensive vector search support for Nextcloud Deck cards,
including semantic search indexing, chunk preview in the vector viz UI,
and proper deep linking to cards.
**Vector Search Indexing**
- Add deck_card scanning in scanner.py (scan_deck_cards function)
- Index cards from non-archived, non-deleted boards
- Store metadata: board_id, board_title, stack_id, stack_title, card_type, duedate, owner
- Content structure: title + "\n\n" + description (matches indexing format)
- Incremental sync based on lastModified timestamp
- Deletion tracking with grace period
**Vector Visualization Support**
- Add deck_card handler in context.py for chunk preview expansion
- Include board_id in search result metadata (bm25_hybrid.py, semantic.py)
- Expose metadata in viz_routes.py JSON responses
- Update vector-viz.js to construct proper Deck URLs: /apps/deck/board/{board_id}/card/{card_id}
- Update vector_viz.html filter label from "Deck" to "Deck Cards"
**Bug Fixes**
- Skip soft-deleted boards (deletedAt > 0) to prevent 403 Forbidden errors
- Applies to scanner, processor, and context expansion code paths
- Deck API returns deleted boards but rejects stack access with 403
**Testing**
- Add integration tests in test_deck_vector_search.py:
- test_deck_card_semantic_search: Filtered search with doc_type="deck_card"
- test_deck_card_appears_in_cross_app_search: Cross-app search includes deck cards
- test_deck_card_chunk_context: Chunk context fetching for viz preview
**Documentation**
- Update README.md: Add Deck cards to semantic search feature list
- Update semantic-search-architecture.md: Document deck_card support
- Update nc_semantic_search tool documentation
**Type Safety**
- Fix type narrowing for page_boundaries (could be None) using cast()
- Fix scanner.py payload None check for type safety
Resolves vector search for Deck cards across indexing, search, and visualization.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Fixed 8 type checker errors across the codebase:
- vector/scanner.py: Handle None scroll results with null-safe iteration
- search/{bm25_hybrid,semantic}.py: Add None checks for result.payload
- auth/{unified_verifier,webhook_routes}.py: Assert non-None auth credentials
- client/webdav.py: Add None checks before int() conversions
- providers/openai.py: Assert embedding_model is not None
- search/algorithms.py: Explicitly type doc_types set and cast values
- observability/logging_config.py: Match parent class signature (log_data)
Also fixed test_create_tag_creates_system_tag to match WebDAV implementation
(was testing OCS API endpoint, now tests correct WebDAV endpoint with
Content-Location header).
Type checker: 0 errors (down from 8), 20 warnings (ignored)
Tests: All 192 unit tests passing
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
Remove the complex starred+unread filtering logic in scan_news_items().
The News app's auto-purge feature (default: 200 items per feed) already
limits the total number of items, making explicit filtering unnecessary.
Changes:
- Replace two API calls (starred + unread) with single all-items call
- Remove deduplication logic that merged both lists
- Update docstring to explain the simpler approach
This reduces code complexity while maintaining the same effective coverage.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Add full integration for the Nextcloud News (RSS/Atom reader) app:
- Add NewsClient with complete CRUD operations for folders, feeds, and items
- Add 8 read-only MCP tools for listing/getting folders, feeds, items
- Add Pydantic models for News entities with camelCase alias support
- Add vector sync support for starred + unread items
- Add HTML to Markdown converter using markdownify for better embeddings
- Add Docker post-install hook to enable News app
- Add 25 unit tests for NewsClient API methods
Vector sync indexes starred and unread items, providing a balanced approach
that captures important (starred) and current (unread) content without
indexing the entire article history.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Adds OpenAI provider to the unified provider architecture (ADR-015),
supporting:
- OpenAI API (api.openai.com)
- GitHub Models API (models.github.ai/inference)
- OpenAI-compatible endpoints (Fireworks, Together, etc.)
Features:
- Embedding support with text-embedding-3-small/large models
- Text generation via chat completions API
- Automatic retry with exponential backoff for rate limits
- Provider auto-detection in registry (priority after Bedrock)
Environment variables:
- OPENAI_API_KEY: API key (required)
- OPENAI_BASE_URL: Base URL override (optional)
- OPENAI_EMBEDDING_MODEL: Embedding model (default: text-embedding-3-small)
- OPENAI_GENERATION_MODEL: Generation model (default: gpt-4o-mini)
Also adds:
- Integration tests for RAG pipeline with MCP sampling
- MCP client sampling support for integration tests
- Ground truth Q&A pairs for Nextcloud User Manual
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Previously, pymupdf4llm.to_markdown() was called twice - once in
PyMuPDFProcessor during indexing and again in PDFHighlighter during
visualization. Different image path lengths caused different character
offsets, leading to highlighted pages not matching their chunks.
Also fixed issue where all chunks on the same page showed all highlights
instead of just their own highlight. Now restores original page contents
between chunks using xref stream caching.
Changes:
- Add PDFHighlighter class requiring pre-computed page_boundaries and
full_text from document processor (no fallback extraction)
- Pass pre-computed data from processor to highlighter
- Extract page-relative portion of chunk text for cross-page chunks
- Add bounding box highlighting using text anchor search
- Run highlight generation in parallel with embedding/BM25
- Cache and restore page contents to isolate highlights per chunk
Results: Highlighting success rate improved from 51% to 95% (121/128).
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Implements optional context expansion for semantic search results that
fetches adjacent chunks (N-1 and N+1) from Qdrant to provide before/after
context. Removes configurable chunk overlap (default 200 chars) to avoid
duplicate text appearing in both context and excerpt.
Key changes:
- Add include_context and context_chars parameters to nc_semantic_search
and nc_semantic_search_answer tools
- Implement Qdrant cache fast path for chunk retrieval (avoids re-fetching
and re-parsing documents, especially important for PDFs)
- Add _get_chunk_by_index_from_qdrant() to fetch adjacent chunks
- Remove chunk overlap from before_context (last N chars) and after_context
(first N chars) to prevent duplicate text
- Fetch context in parallel with anyio.Semaphore (max 20 concurrent)
- Pass through page_number from SearchResult to SemanticSearchResult
- Remove document-level deduplication (keep chunk-level dedup from algorithm)
Context expansion is opt-in via include_context=true parameter. When enabled:
- Populates has_context_expansion, marked_text, before_context, after_context
- Adds truncation flags when context exceeds context_chars limit
- Falls back to document fetch for legacy data with truncated excerpts
Related: nextcloud_mcp_server/search/context.py:87-382,
nextcloud_mcp_server/server/semantic.py:161-255
The processor was not setting is_placeholder field when writing real
document chunks to Qdrant. This caused the placeholder filter to exclude
all documents (since None != False), resulting in 0 search results.
Now explicitly sets is_placeholder: False in payload when writing real
indexed chunks, allowing search filters to correctly distinguish between
placeholders and real documents.
- Changed from 2x (120s) to 5x (300s) scan interval
- Large PDFs take 3-4 minutes to process, need longer threshold
- Prevents premature requeuing of in-flight documents
- Only requeue documents if placeholder is older than 2x scan interval (120s default)
- Prevents scanner from immediately requeuing in-flight documents
- Fixes issue where PDFs were being reprocessed every 60 seconds
- Staleness check applied to both notes and files scanning logic
Qdrant validation rejects None for sparse vectors in named vector dicts.
Use models.SparseVector(indices=[], values=[]) instead to create valid
empty sparse vectors for placeholder points.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Introduces a placeholder-based state tracking system to prevent duplicate
document processing during the gap between scanner queuing and processor
completion.
**Key Changes:**
1. **Placeholder Helper Functions** (`vector/placeholder.py`):
- `write_placeholder_point()` - Creates zero-vector placeholder when queuing
- `query_document_metadata()` - Queries for existing entry (placeholder or real)
- `delete_placeholder_point()` - Removes placeholder before writing real vectors
- `get_placeholder_filter()` - Filters placeholders from user-facing queries
2. **Scanner Updates** (`vector/scanner.py`):
- Replace `indexed_at` comparison with `modified_at` comparison
- Write placeholder before queuing each document
- Query per-document metadata instead of bulk-querying indexed_at
- Fixes bug where files were resubmitted every scan cycle
3. **Processor Updates** (`vector/processor.py`):
- Delete placeholder before upserting real vectors
- Ensures no duplicate points in Qdrant
4. **Query Filters** (all search files):
- Add `get_placeholder_filter()` to all user-facing queries
- Ensures placeholders never appear in search results or visualizations
- Applied to: bm25_hybrid.py, semantic.py, viz_routes.py, algorithms.py
**Architecture:**
- Placeholders use zero vectors with dimension from embedding service
- Payload includes `is_placeholder: True` flag for filtering
- Status field tracks: "pending", "processing", "completed", "failed"
- Deterministic UUIDs using uuid5 for consistent point IDs
**Impact:**
- Eliminates duplicate processing of same documents
- Fixes race condition where long-running documents get queued multiple times
- Prevents scanner from resubmitting files every scan cycle
- Maintains clean separation between in-flight and indexed documents
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
This commit fixes two critical issues with PDF processing:
1. **Text extraction mismatch (context expansion bug)**:
- Indexing used pymupdf4llm.to_markdown() producing markdown text
- Context expansion used page.get_text() producing plain text
- Different text formats caused character offset misalignment
- Search would find correct chunk, but expansion showed wrong section
- Fixed by making context.py use pymupdf4llm.to_markdown() consistently
2. **Diagnostic logging for page number assignment**:
- Added logging to verify page_boundaries exist in metadata
- Added logging to verify assign_page_numbers() assigns values
- Helps diagnose why page numbers show as null in search results
3. **mime_type storage bug**:
- Fixed incorrect field reference in processor.py:405
- Was using file_metadata.get("content_type", "")
- Should use content_type from WebDAV response
Changes:
- nextcloud_mcp_server/search/context.py: Use pymupdf4llm.to_markdown()
for PDF text extraction to match indexing method
- nextcloud_mcp_server/vector/processor.py: Add diagnostic logging for
page boundaries and assignment, fix mime_type storage
- tests/unit/client/test_webdav.py: Fix import sorting
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- scanner.py: Use file_info['id'] as doc_id instead of file_path
- scanner.py: Pass file_path in DocumentTask for content retrieval
- processor.py: Store file_path in Qdrant payload for later lookup
- context.py: Add _get_file_path_from_qdrant() to resolve file_id → file_path
- context.py: Update get_chunk_with_context() to handle file ID resolution
This makes the system resilient to file renames since file IDs are stable
identifiers in Nextcloud, while file paths can change.
This commit addresses multiple issues with async operations, PDF metadata
extraction, and type safety in document processing and search.
## Async/Await Fixes
- processor.py:259 - Added await for chunker.chunk_text(content)
- processor.py:270 - Added await for bm25_service.encode_batch(chunk_texts)
- tests/unit/test_document_chunker.py - Converted all 12 test methods to async
## PDF Metadata Enhancement
- pymupdf.py:143 - Added file_size metadata extraction
- pymupdf.py:145-206 - Refactored to extract text page-by-page
- Manually loop through pages instead of using page_chunks=True
- Generate page_boundaries metadata for precise page tracking
- Works around pymupdf.layout.activate() breaking page_chunks=True
- processor.py:32-66 - Added assign_page_numbers() helper function
- Assigns page numbers to chunks based on overlap with page boundaries
- Handles chunks spanning multiple pages
- processor.py:298-300 - Call assign_page_numbers() for PDF files
## Type Safety Fixes
- bm25_hybrid.py:184 - Removed int() conversion of doc_id
- semantic.py:131 - Removed int() conversion of doc_id
- viz_routes.py:275 - Removed int() conversion of doc_id
- Added comments documenting that doc_id can be int (notes) or str (file paths)
## Testing
- All 18 tests passing (12 unit + 6 integration)
- No type errors in modified files
- Container logs show successful processing
- Vector viz searches working correctly
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
- Extract CSS and JavaScript into separate static files
- Created nextcloud_mcp_server/auth/static/vector-viz.css
- Created nextcloud_mcp_server/auth/static/vector-viz.js
- Updated templates to reference external assets
- Fix vector visualization issues:
- Normalize vectors before PCA to match Qdrant's cosine distance
- Add zero-norm and NaN detection/handling for large datasets
- Enable responsive Plotly sizing (autosize + responsive config)
- Widen plot area to full viewport width with minimized margins
- Improve visualization accuracy:
- Query point now positioned correctly relative to documents
- Handles 200+ points without JSON serialization errors
- Full-width plot maximizes screen space utilization
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Migrates from custom word-based chunking to LangChain's MarkdownTextSplitter
for better semantic search quality. This implements the chunking portion of
ADR-011.
Changes:
- Replace custom regex word chunker with MarkdownTextSplitter
- Optimized for Markdown content (headers, code blocks, lists)
- Convert from word-based (512 words) to character-based (2048 chars) chunking
- Maintain backward-compatible ChunkWithPosition interface
- Update configuration defaults and validation
- Update all unit tests (12/12 passing)
Benefits:
- Respects markdown structure boundaries
- Never breaks code blocks or headers mid-chunk
- Preserves semantic coherence within chunks
- Expected 20-30% improvement in recall quality
- Industry-standard approach (used by production RAG systems)
Note: Full reindex required to apply new chunking to existing documents.
Current vector database still contains old word-based chunks.
Related: ADR-011 (Improving Semantic Search Quality)
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Track character offsets (start_offset, end_offset) for each chunk in vector
database metadata, enabling precise chunk highlighting in visualization pane.
Changes:
- processor.py: Store chunk_start_offset and chunk_end_offset in Qdrant metadata
- processor.py: Added metadata_version=2 to indicate position tracking support
- search/semantic.py: Return chunk positions from search results
- server/semantic.py: Expose chunk positions in API responses (SemanticSearchResult)
Enables viz pane to:
1. Display exact matched chunk with surrounding context
2. Highlight the precise portion of text that matched the query
3. Build user trust by showing what the RAG system actually retrieved
Position tracking uses ChunkWithPosition dataclass from document_chunker.py
which provides character-accurate offsets in the original document.
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
Fixed a critical infinite loop bug in document_chunker.py that occurred
when the overlap parameter caused the chunker to not make forward progress.
Changes:
- Added ChunkWithPosition dataclass to track character positions
- Refactored chunk_text() to use regex word matching for accurate position tracking
- Added safety check to ensure forward progress (next_start_idx > start_idx)
- Changed return type from list[str] to list[ChunkWithPosition]
The bug manifested when:
1. end_idx reached len(word_matches) (processing last chunk)
2. next_start_idx = end_idx - overlap would not advance past start_idx
3. Loop would continue indefinitely without making progress
Fix ensures chunker always terminates by breaking when not advancing.
All 9 unit tests now pass in 1.66s (previously timing out at 180s).
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
This commit addresses critical performance issues with vector visualization
search (reducing time from 40s to ~2s) and improves result visualization
through better visual encoding.
## Performance Fixes
### 1. Fix blocking sleep in retry decorator (base.py:51)
- Changed `time.sleep(5)` to `await anyio.sleep(5)` in @retry_on_429
- Prevents entire event loop from freezing during rate limit retries
- Impact: Reduced search time from 22s to 16s initially
### 2. Add concurrency limiting for verification (verification.py:77-93)
- Added `anyio.Semaphore(20)` to limit concurrent HTTP requests
- Prevents connection pool exhaustion (RequestError) from 90+ simultaneous requests
- Fixes false filtering (was filtering 77/90 results incorrectly)
- Note: Semaphore still in code but verification removed from viz endpoint
### 3. Remove unnecessary verification from viz endpoint (viz_routes.py:483-486)
- Visualization only needs Qdrant metadata (title, excerpt), not full content
- Verification only required for sampling (LLM needs full note content)
- Impact: Reduced search time from 43.7s to ~2s (final fix)
### 4. Restore streaming scanner pattern (scanner.py)
- Process notes one-at-a-time using async generator
- Avoids loading all notes into memory
## Visualization Improvements
### 5. Result-relative score normalization (viz_routes.py:489-504)
- Normalize scores within result set: best=1.0, worst=0.0
- Removes arbitrary RRF normalization (theoretical max didn't make sense)
- Makes visual encoding meaningful regardless of algorithm scores
### 6. Power scaling for marker sizes (userinfo_routes.py:743)
- Changed from linear `8 + (score * 12)` to power `6 + (score² * 14)`
- Creates dramatic visual contrast: 0.0→6px, 0.5→9.5px, 1.0→20px
- Combined with opacity (0.2-1.0) for clear visual hierarchy
### 7. Multi-channel visual encoding (userinfo_routes.py:740-745)
- Size: Exponentially scaled with score²
- Opacity: Linear 0.2-1.0 (keeps all points visible)
- Color: Viridis gradient (blue→yellow)
- Effect: Top results are large/bright/opaque, context results small/dim/transparent
## Result
- Search time: 40s → ~2s (20x faster)
- Visual contrast: Subtle → dramatic (clear result hierarchy)
- No arbitrary cutoffs: All results visible, best naturally highlighted
🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude <noreply@anthropic.com>
