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Commits
| Author | SHA1 | Message | Date | |
|---|---|---|---|---|
 Chris CoutinhoandClaude Opus 4.7
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d717c64750 |
fix(storage): address PR #798 round-4 review (NOSONAR syntax + pg_advisory_lock + engine dispose + nits)
Addresses all 8 items in the round-4 bot review plus 4 remaining SonarQube OPEN issues that were silently broken by round 3's malformed NOSONAR markers. NOSONAR syntax fix (clears the remaining 4 OPEN SQ issues) ---------------------------------------------------------- Round 3 used ``# NOSONAR S<rule_key>`` form. SonarQube Python doesn't recognize the rule-key suffix — it treats the whole thing as a malformed suppression directive (S7632) AND lets the underlying rule keep firing (S7503 on ``_Cursor.__aenter__/__aexit__``). Switch every marker to bare ``# NOSONAR``, with the rationale moved into a preceding comment block. Affected sites: - storage.py: ``_Cursor.__aenter__``, ``_Cursor.__aexit__`` - config.py: ``get_database_ssl()`` ``return False`` + ``ssl.create_default_context()`` - test_storage_logging.py: ``SENTINEL_PASSWORD_FRAGMENT`` constant - test_storage_postgres.py: three ``bob_pw_v1`` / ``bob_pw_v2`` / ``carol_pw`` literals Bot 🔴#1 — defensive NOSONAR on get_database_ssl `return False` -------------------------------------------------------------- Bot predicted S4830 fires on the operator-opt-out path. SQ output shows it doesn't currently fire, but bare NOSONAR added defensively with rationale comment. Bot 🔴#2 — defensive NOSONAR on f-string SQL -------------------------------------------- ``update_oauth_session`` builds its SET clause via ``f"{', '.join(update_fields)}"``; ``get_audit_logs`` builds its WHERE clause via string concatenation. Both are safe (the fragments only come from this function's own branches, no user input), but the patterns trip taint analysers. Annotated both with bare NOSONAR + safety comment explaining the hardcoded-fragments invariant. Note: S2077 doesn't currently fire on these; defensive. Bot 🟡#3 — pg_advisory_lock for concurrent migrations ----------------------------------------------------- Without coordination, two pods rolling-updating simultaneously can both observe ``has_alembic=False`` and both try to apply migrations from scratch — the second crashes with "relation already exists". New ``_migration_lock()`` async context manager: - On Postgres: ``SELECT pg_advisory_lock(:lock_id)`` on a fresh connection (separate from the engine pool so it survives the ``to_thread.run_sync`` worker), held across BOTH the schema-inspect AND the migration call. Without that span, two pods could each observe "no alembic_version" before either started migrating, defeating the lock. - On SQLite: yields immediately (file-level locking serializes writes natively). Lock ID derived from ``sha256(b"nextcloud-mcp-server:migrations")[:8]`` as a stable signed int64 so we can't collide with other apps sharing the same Postgres. Bot 🟡#4 — RefreshTokenStorage.close() + lifespan wiring -------------------------------------------------------- New idempotent ``close()`` method calls ``await engine.dispose()``, nulls the engine, resets ``_initialized``. Wired into both ``app_lifespan_basic`` (BasicAuth) and the OAuth lifespan teardown, each wrapped in ``try/except Exception`` with ``logger.warning`` so a buggy dispose can't block SIGTERM. Without this, pooled asyncpg connections leak server-side slots until ``idle_in_transaction_session_timeout`` reaps them — with small pool defaults and frequent k8s rolling restarts this can starve ``max_connections``. Bot 🟢#5 — is_sqlite_url docstring on :memory: ---------------------------------------------- Updated docstring to note both file-backed and in-memory forms are recognized; caller is responsible for ``:memory:`` magic. Bot 🟢#6 — db_path via make_url(...).database --------------------------------------------- Replaced ``database_url.split("///", 1)[1]`` hack with SQLAlchemy's own URL parsing. Naturally handles in-memory (``.database is None`` → falls back to ``""``). Same lazy-import pattern as the existing ``mask_db_password`` to avoid module-import-time cost. Bot 🟢#7 — _to_sync_url unrecognized-driver guard ------------------------------------------------- Pulled ``_KNOWN_ASYNC_DRIVERS = ("aiosqlite", "asyncpg")`` into a module constant. When an unrecognized ``+<driver>`` token survives the strip, emits ``logger.warning`` with the known-supported list. Behavior unchanged for valid URLs. Bot 🟢#8 — get_audit_logs SELECT * → explicit columns ----------------------------------------------------- Replaced ``SELECT *`` with explicit column list. Future schema additions stay out of the dict return. New tests --------- - ``test_close_disposes_engine``: pins the public contract — engine nulled, state reset, second call is a no-op. - ``test_concurrent_initialize_serialized_by_advisory_lock``: spawns 3 concurrent inits against a fresh schema; asserts no "relation already exists" and exactly one ``alembic_version`` row at the end. Without the lock, this reliably fails on the second concurrent task. Docs ---- - ADR-026: new "Concurrent migrations across pods" subsection documents the advisory-lock approach + lock-ID derivation. Verification ------------ - ``uv run pytest tests/unit/`` — 1025 passed. - ``TEST_DATABASE_URL=… uv run pytest tests/integration/test_storage_postgres.py -m postgres`` — 9 passed (was 7). - ``ruff check && ruff format --check && ty check`` — clean. Expected post-push: SQ scan reports 0 OPEN issues (was 4). Tracked on Astrolabe Cloud POC board, card #99. --- _This PR was generated with the help of AI, and reviewed by a Human_ Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> |
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Chris CoutinhoandClaude Opus 4.7
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f2b7bf132f |
fix(storage): address PR #798 review feedback (credentials, asyncpg extra, TLS, pool)
Round-2 fixes after the bot review on PR #798 plus two user follow-ups (self-signed Postgres support; asyncpg should be a PyPI extra). Folded into the same PR rather than a follow-up since the work is still unmerged. Security -------- - Mask database credentials in all 5 log call sites (storage.py × 4, migrations.py × 1) via a new `mask_db_password()` helper in config.py. Uses SQLAlchemy's `make_url(...).render_as_string(hide_password=True)` with a regex fallback so the masking path never raises. - New `tests/unit/test_storage_logging.py` asserts a sentinel password never appears in `caplog` during `RefreshTokenStorage.initialize()`. Distribution ------------ - `asyncpg` moved to `[project.optional-dependencies] postgres` so a vanilla `pip install nextcloud-mcp-server` no longer pulls in the ~5 MB C extension. The Docker image runs `uv sync --extra postgres`, so containerized deployments are unchanged. - When `DATABASE_URL=postgresql+asyncpg://...` is set on a venv missing the extra, `RefreshTokenStorage.initialize()` raises a friendly RuntimeError pointing at `[postgres]` rather than the generic ModuleNotFoundError. TLS for the Postgres backend ---------------------------- - New `DATABASE_VERIFY_SSL` + `DATABASE_CA_BUNDLE` env vars mirror the existing `NEXTCLOUD_VERIFY_SSL` / `NEXTCLOUD_CA_BUNDLE` pattern (validators in Settings.__post_init__, `get_database_ssl()` helper alongside `get_nextcloud_ssl_verify()`). `DATABASE_VERIFY_SSL=false` wins over `DATABASE_CA_BUNDLE` for incident-response convenience. - Default is **None** rather than True — keeps PR #798's behavior intact for cluster-internal Postgres that runs without TLS. Operators opt into verify-full or supply a private CA. ADR-026 records the reasoning vs the Nextcloud HTTPS default. - Engine factory in `storage.py` passes `ssl` via `connect_args` only when `get_database_ssl()` returns non-None; otherwise asyncpg's default (`prefer`) applies. - Storage logs which TLS mode is active at INFO (no secret material). Configurable connection pool ---------------------------- - `DATABASE_POOL_SIZE` (default 10) and `DATABASE_MAX_OVERFLOW` (default 20) replace the hardcoded engine values. With many replicas this can blow past managed-Postgres `max_connections=100`; tune down for large fleets. - gte-1 / gte-0 validators in __post_init__ reject 0/negative pool sizes at startup with the offending value in the error. Consistency polish ------------------ - Migration 006: convert raw `op.execute("ALTER TABLE ... ADD COLUMN")` to `op.batch_alter_table(...).add_column(sa.Column("nonce", sa.Text))` for stylistic consistency with the rewritten 001-005. Downgrade now drops the column instead of being a no-op. - `registered_webhooks.created_at` standardized from `sa.Float` to `sa.BigInteger` (all other `*_at` columns); `store_webhook()` casts `time.time()` → `int`. - `is_sqlite_url()` made case-insensitive. Testing ------- - New `tests/integration/test_storage_postgres.py::test_cleanup_expired_roundtrip` exercises `cleanup_expired_tokens`, `cleanup_expired_sessions`, and `cleanup_expired_browser_sessions` — relies on DELETE rowcount, historically dialect-tricky. - `tests/unit/test_ssl_config.py` extended with `TestDatabaseSSLSettings` + `TestGetDatabaseSSL` classes (9 new tests) mirroring the existing Nextcloud SSL tests one-for-one. Docs ---- - `docs/configuration.md` Centralized-Storage section grew the four new env vars + a homelab example with a private CA. - `docs/ADR-026` grew Distribution, TLS, and `alembic/env.py` async-pattern subsections explaining the non-obvious design choices. Helm chart counterpart in cbcoutinho/helm-charts PR #34 (separate commit on `feat/nextcloud-mcp-server-database-url`). Verification ------------ - `uv run pytest tests/unit/` — 1025 passed. - `TEST_DATABASE_URL=... uv run pytest tests/integration/test_storage_postgres.py -m postgres` — 6 passed (including new cleanup test). - `uv run ruff check && uv run ruff format --check && uv run ty check -- nextcloud_mcp_server` — clean. Tracked on Astrolabe Cloud POC board, card #99. --- _This PR was generated with the help of AI, and reviewed by a Human_ Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com> |
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Chris CoutinhoandClaude Opus 4.7
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292cbb3292 |
feat(storage): pluggable database backend via DATABASE_URL (ADR-026)
Adds a `DATABASE_URL` setting that lets `RefreshTokenStorage` run against
any SQLAlchemy async backend, primarily `postgresql+asyncpg://...` for
HA k8s deployments. Default behavior is unchanged: when `DATABASE_URL` is
unset the server falls back to the existing `TOKEN_STORAGE_DB` path /
ephemeral SQLite tempfile.
Why
---
Today every MCP pod needs its own PVC to hold the SQLite file, which
pins the Deployment to one replica and blocks horizontal scaling. With
this change, operators can point all replicas at a shared Postgres
(CNPG, RDS, etc.) and the pods become stateless. Encryption stays in
Python (Fernet); the database only sees ciphertext.
What changed
------------
- `config.get_database_url()` resolves DATABASE_URL → TOKEN_STORAGE_DB →
ephemeral tempfile in that priority order.
- `RefreshTokenStorage` builds a process-shared `AsyncEngine` in
`initialize()`. SQLite gets NullPool; Postgres gets pool_size=10,
max_overflow=20, pool_pre_ping=True. 30 aiosqlite call sites adapted
via a thin `_DBConn` / `_Cursor` / `_Row` / `_ExecuteCtx` shim so
existing method bodies need no churn beyond the connection
context-manager swap.
- 7 `INSERT OR REPLACE` statements rewritten as portable
`INSERT ... ON CONFLICT (...) DO UPDATE` (SQLite ≥ 3.24, Postgres ≥ 9.5).
- `sqlite_master` legacy-detection lookup replaced with SQLAlchemy
inspector so the path works against either backend.
- File-permission hardening + parent-dir creation gated on
`is_sqlite_url(...)` — centralized backends manage their own filesystem.
- Alembic migrations 001/002/003/005 converted from raw `op.execute(SQL)`
to portable `op.create_table()` / `op.create_index()` with SQLAlchemy
types. All timestamp columns are `sa.BigInteger` so Postgres allocates
BIGINT (unix epochs don't fit in INT4). SQLite treats BIGINT as
INTEGER, so existing deployments at revision 006 see no schema drift.
- `migrations.py` + CLI take URLs; `db {upgrade,downgrade,current,history}`
gain `--database-url / -u` alongside the legacy `--database-path / -d`.
`get_current_revision()` uses SQLAlchemy inspector instead of raw
sqlite3, so the CLI works against Postgres too.
- `docker-compose.yml` adds a `postgres-test` service under the
`postgres` profile (pinned `postgres:16-alpine` digest) for
integration testing.
- Unit storage tests parametrized over backends via shared
`tests/fixtures/storage_backend.py` — every test in
`test_app_password_storage.py` and `test_webhook_storage.py` runs
once per backend that is available. Postgres is opted in by
`TEST_DATABASE_URL`.
- New `tests/integration/test_storage_postgres.py` (5 tests, marked
`postgres` + `integration`) covers refresh-token, app-password,
OAuth-session, webhook, and audit-log paths end-to-end on Postgres.
- New `docs/ADR-026-pluggable-database-backend.md` records the decision;
`docs/configuration.md` documents `DATABASE_URL` with examples.
Out of scope
------------
- No SQLite → Postgres data migration tool (clean cutover; tokens reissue
on next login, webhooks re-register on next sync tick).
- This repo does not provision Postgres. The matching helm chart change
lives in cbcoutinho/helm-charts (database.url / existingSecret values).
Verification
------------
- `uv run pytest tests/unit/` — 1012 passed, SQLite path unchanged.
- `docker compose --profile postgres up -d postgres-test`
- `TEST_DATABASE_URL=... uv run pytest tests/integration/test_storage_postgres.py -m postgres -v`
— 5 passed.
- `TEST_DATABASE_URL=... uv run pytest tests/unit/test_app_password_storage.py
tests/unit/test_webhook_storage.py` — 50 passed (25 per backend).
- `uv run ruff check && uv run ruff format --check && uv run ty check -- nextcloud_mcp_server` — clean.
Tracked on Astrolabe Cloud POC board, card #99.
---
_This PR was generated with the help of AI, and reviewed by a Human_
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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Chris CoutinhoandClaude Opus 4.7
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665cb9b1eb |
refactor: convert f-string logging to lazy %-style format (G004)
Sweep all 1676 G004 violations across 112 files, converting
`logger.<level>(f"…{x}…")` to `logger.<level>("…%s…", x)`.
Why: ruff rule G004 was added to pyproject.toml to enforce lazy
%-style logging — defers formatting until the log level is enabled
and lets structured log tooling match the unformatted template.
Conversion preserves rendered output byte-for-byte:
- `{x}` → `%s` + `x`
- `{x!r}` / `{x!s}` / `{x!a}` → `%r` / `%s` / `%a`
- Format specs (`{x:.2f}`, `{x:>10}`) → `%s` + `format(x, 'spec')`
(printf-style specs aren't 1:1 with Python format specs, so we
delegate to `format()` to keep identical output)
- Literal `%` → `%%`
- Concatenated f-strings (`f"a {x} " "b"`) flattened
- Trailing kwargs (`exc_info=True`) preserved
Verified:
- `uv run ruff check --select G004` → 0 violations
- `uv run ty check -- nextcloud_mcp_server` → passes
- `uv run pytest tests/unit/` → 1010 passed
Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
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Chris CoutinhoandClaude Opus 4.6
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146b622ebf |
fix: enable uvx/PyPI deployments without Docker assumptions
Two bugs made `uvx --from . nextcloud-mcp-server run` (and any pip install) unusable outside Docker: 1. Dynaconf was configured with ignore_unknown_envvars=True and relied on settings.toml to declare the key schema. With no settings.toml in a wheel install, every env var (NEXTCLOUD_HOST, MCP_DEPLOYMENT_MODE, ...) was silently dropped. Moved the schema into a Python _DEFAULTS dict passed directly to Dynaconf, kept settings.toml as an optional external override (renamed to settings.toml.example, gitignored), and pointed docker-compose at the example file. 2. Token SQLite DB defaulted to /app/data/tokens.db in multiple places (auth/storage.py, migrations.py, alembic/env.py, cli.py db subcommands), which blew up at uvicorn startup with FileNotFoundError on non-Docker hosts. Replaced with a new config.get_token_db_path() helper that resolves TOKEN_STORAGE_DB if explicitly set, otherwise allocates a per-process tempfile cleaned up at interpreter exit via atexit — mirroring the "ephemeral by default" pattern used for QDRANT_LOCATION=:memory:. Containers are unaffected: docker-compose services now explicitly set TOKEN_STORAGE_DB=/app/data/tokens.db (the fourth service that was missing this pin has been brought in line with the other three). Verified end-to-end in an isolated /tmp venv: env-var-only startup, Alembic migrations run against the tempfile, Application startup complete, /health/live returns 200, tempfile deleted on SIGTERM. Unit tests (464) + ruff + ty pass. Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com> |
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Chris CoutinhoandClaude Opus 4.6
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a11ae9c027 |
refactor: enforce PLC0415 (import-outside-top-level) for source code
Enable ruff PLC0415 rule for all source files (tests excluded via per-file-ignores). Move 136 inline imports to top-level across 33 files. 8 imports suppressed with noqa for legitimate reasons: circular dependencies (client/__init__.py, context.py), optional dependency guards (app.py document processors, auth/userinfo_routes.py), and post-env-setup imports (smithery_main.py). Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com> |
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Chris Coutinho
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056414752e | fix(mcp): Move all imports to the top of modules | ||
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Chris CoutinhoandClaude Sonnet 4.5
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54b69f0d68 |
fix: move Alembic to package submodule for Docker compatibility
- Move alembic/ directory to nextcloud_mcp_server/alembic/ subpackage - Update migrations.py to use package location instead of alembic.ini - Update env.py to set script_location dynamically - Update alembic.ini for development CLI usage - Fix Dockerfile typo: .vnev -> .venv This fixes FileNotFoundError when running in Docker with non-editable install. The alembic package is now installed with the main package, making it work in both development and production environments. Resolves: Docker startup error 'alembic.ini not found at /app/.venv/lib/python3.12/site-packages/alembic.ini' 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com> |
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Chris CoutinhoandClaude Sonnet 4.5
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3fa376905c |
feat: add Alembic database migration system
Implements Alembic for managing token storage database schema versions. Migrations run automatically on startup with full backward compatibility. **Changes:** - Add Alembic dependency (1.14.0+) and SQLAlchemy (auto-installed) - Create migration infrastructure in alembic/ directory - Add initial migration (001) capturing current schema - Modify RefreshTokenStorage.initialize() to run migrations via anyio - Add CLI commands: db upgrade, current, history, downgrade, migrate - Add comprehensive migration documentation **Backward Compatibility:** - Pre-Alembic databases automatically stamped with revision 001 - No schema changes for existing databases - Automatic upgrade on first startup after update **Migration Strategy:** Three scenarios handled: 1. New database → Run migrations from scratch 2. Pre-Alembic database → Stamp with 001 (no changes) 3. Alembic-managed → Upgrade to latest **Architecture:** - Uses anyio.to_thread.run_sync() for structured concurrency - Alembic env.py runs with anyio.run() in worker thread - SQLite-friendly migration patterns documented - No ThreadPoolExecutor needed (anyio handles it) **CLI Usage:** ```bash nextcloud-mcp-server db upgrade # Upgrade to latest nextcloud-mcp-server db current # Show version nextcloud-mcp-server db history # View changelog nextcloud-mcp-server db downgrade # Rollback (with confirmation) nextcloud-mcp-server db migrate "description" # Create migration ``` **Testing:** - All 13 webhook storage tests pass - New/pre-Alembic database scenarios validated - anyio integration tested 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com> |