Commit Graph
31 Commits
Author SHA1 Message Date
Chris CoutinhoandClaude Opus 4.8 1f8b3ba95e fix: resolve startup NameError in vector-sync metrics task
The Starlette lifespan started `vector_sync_metrics_task` with undefined
names `task_producer` and `receive_stream`. Those locals only exist inside
the `_wire_vector_sync_state` helper; in the lifespan the transport is bound
as `ingest_transport`. The undefined reference raised `NameError`, which
aborted the background-sync task group and crashed startup in every
deployment mode ("Application startup failed. Exiting.").

Introduced by fbe70ecd ("feat: backend-agnostic vector-sync gauges").

Pass `ingest_transport.producer` / `ingest_transport.receive_stream` at both
call sites (single-user app.py:1791, OAuth/login-flow app.py:2012).

Also fix 10 pre-existing `ty` possibly-missing-attribute diagnostics: the
deck indexing code in scanner.py, processor.py and search/context.py reads
full-DeckCard-only fields (description, type, owner, etag, lastModified) off
`stack.cards`, typed `list[DeckCard | DeckCardSummary]`. Freshly-fetched
stacks from `get_stacks()` always hold full DeckCards (the summary
projection only happens in the tool layer), so narrow with
`cast(list[DeckCard], ...)` — matching the existing pattern in
server/deck.py.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-04 22:10:40 +02:00
Chris CoutinhoandClaude Opus 4.8 29500bea7e fix: PR #813 review — cap unified_search multi-type pool; document deck self-only
🟡 Performance: unified_search's _execute sorted but did not cap the merged
multi-doc_type pool, so N doc_types each fetched at search_limit sent
N*search_limit candidates into verify-on-read (one Nextcloud round-trip each).
Cap to search_limit*2 after the sort, matching vector_search, nc_semantic_search
and the viz_routes pattern — bounding verification cost to O(2*search_limit)
regardless of how many doc_types are requested.

🟡 Consistency: _get_deck_metadata_from_qdrant is the one internal Qdrant lookup
that uses a raw user_id filter instead of build_ownership_filter. This is not a
bug — deck cards are a documented cross-user gap (the Deck API is per-user, so
cross-user context can't be fetched with the caller's credentials) — but the
inconsistency was unexplained. Added a comment documenting the deliberate
self-only scope.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-05-29 17:49:21 +02:00
Chris CoutinhoandClaude Opus 4.8 8deb48e6fa fix: address PR #813 review round 4 (log leak, cross-user chunk ctx, algo, overlap)
1. Don't log unverified result titles: both search algorithms logged top-5
   titles at DEBUG before verify-on-read; with owner-level share expansion the
   unverified set can contain other users' docs. Algorithms now log a count
   only; the verifying callers (server/semantic, viz_routes, api/visualization)
   log verified titles after verify-on-read.

2. Cross-user FILE chunk context: get_chunk_with_context + the Qdrant chunk
   helpers now take accessible_owners and use build_ownership_filter. For files
   the expanded scope is honoured only after a per-file file_accessible_by_id
   check (accessible_owners is owner-level, so the gate prevents a one-file
   share recipient from reading any of the owner's cached chunks). note/deck/
   news stay self-only (per-user APIs) — a documented gap. Both chunk endpoints
   pass accessible_owners.

3. Algorithm usage: SemanticSearchAlgorithm is not dead (it backs the dense-only
   option on the viz/API surfaces); added a clarifying comment in server/
   semantic.py. Additionally wired accessible_owners + verify-on-read into the
   /api/v1 search routes (unified_search, vector_search) so the astrolabe
   surface is ACL-aware too — degrading gracefully to self-only/unverified for
   non-provisioned callers instead of 401.

4. Overlapping conditions: build_ownership_filter no longer lists self in the
   owner_id MatchAny branch (self is already covered by the user_id branch);
   the owner_id branch carries only the OTHER owners.

Tests: build_ownership_filter dedup + chunk-bbox filter-shape updates; new
ACL-aware get_indexed_doc_types, cached-chunk lookup, and end-to-end cross-user
file chunk-context (recipient gets the chunk, non-recipient denied) tests.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-05-29 16:55:00 +02:00
Chris CoutinhoandClaude Opus 4.7 665cb9b1eb refactor: convert f-string logging to lazy %-style format (G004)
Sweep all 1676 G004 violations across 112 files, converting
`logger.<level>(f"…{x}…")` to `logger.<level>("…%s…", x)`.

Why: ruff rule G004 was added to pyproject.toml to enforce lazy
%-style logging — defers formatting until the log level is enabled
and lets structured log tooling match the unformatted template.

Conversion preserves rendered output byte-for-byte:
- `{x}` → `%s` + `x`
- `{x!r}` / `{x!s}` / `{x!a}` → `%r` / `%s` / `%a`
- Format specs (`{x:.2f}`, `{x:>10}`) → `%s` + `format(x, 'spec')`
  (printf-style specs aren't 1:1 with Python format specs, so we
  delegate to `format()` to keep identical output)
- Literal `%` → `%%`
- Concatenated f-strings (`f"a {x} " "b"`) flattened
- Trailing kwargs (`exc_info=True`) preserved

Verified:
- `uv run ruff check --select G004` → 0 violations
- `uv run ty check -- nextcloud_mcp_server` → passes
- `uv run pytest tests/unit/` → 1010 passed

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-13 01:12:17 +02:00
Chris CoutinhoandClaude Opus 4.7 c5020d9629 fix(vector): address PR review round 14 — accurate offset-skip comment + news_item doc_id guard
Round-14 review surfaced one blocking and one important issue.

context.py: the comment justifying `skip_offset_lookup` claimed
chunk_start/end_offset weren't in _PAYLOAD_INDEX_FIELDS — round 13
indexed both as INTEGER, so the comment now actively misleads. Replace
with the real reason: an indexed chunk_index miss is canonical (both
paths hit the same Qdrant collection), and skipping the offset filter
avoids a redundant round-trip.

verification.py: hoist an is_valid_nextcloud_doc_id guard before the
`int(d)` cast in _verify_news_items, mirroring the boundary-validation
pattern already in _fetch_document_text. Coerce via `str(d)` because
SearchResult.id is `int | str` (D1 forward-compat widening). Malformed
ids now surface as a logger.warning rather than a generic debug line;
fail-open semantics are preserved.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-10 11:50:46 +02:00
Chris CoutinhoandClaude Opus 4.7 f9ad7dc52e fix(vector): address PR review round 12 — bool guard + strict doc_id validation
- _group_int_doc_ids: use type(value) is not int instead of isinstance,
  since bool is an int subclass and would otherwise stringify to
  "True"/"False" and corrupt legacy payloads on backfill.
- Replace doc_id.isdigit() guards in 5 boundary sites
  (api/visualization, auth/viz_routes, search/context note/news_item/
  deck_card branches) with a shared is_valid_nextcloud_doc_id helper
  that rejects "0", leading zeros, and Unicode digit classes
  (superscripts, Arabic-Indic, Devanagari) which pass isdigit() but
  cannot be valid MySQL AUTO_INCREMENT IDs.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-09 20:28:47 +02:00
Chris CoutinhoandClaude Opus 4.7 f3ce46da0f fix(vector): address PR review round 11 — broaden offset-skip gate, clarify ordering
- search/context.py: drop the doc_type=='file' guard on skip_offset_lookup
  so notes / deck cards / news items also bypass the unindexed offset
  fallback when chunk_index is available. Legacy chunk_index=None data
  still uses the offset path.
- vector/qdrant_client.py: clarify the backfill/_ensure_payload_indexes
  ordering invariant (backfill rewrites payload values only, never schema
  or indexes). Acknowledge OSS-vs-Cloud uncertainty in the 400-branch
  comment and the new-collection call-site comment.
- vector/scanner.py: hoist qdrant_client to function scope so the
  file-scroll block doesn't depend on a name bound inside the
  notes-scroll block.
- tests/unit/test_chunk_context_offset_gate.py: flip the note-with-
  chunk_index test to assert the offset fallback is skipped.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-09 17:59:41 +02:00
Chris CoutinhoandClaude Opus 4.7 fec1596784 fix(vector): address PR review round 9 — drop redundant guard, add init lock, test float doc_id path
Addresses the four 🟡 important findings from claude-bot review on PR #773:

str (non-Optional) and the guard would silently skip the Qdrant lookup
for an empty string. Removing the guard matches the type signature.

(`all([…, doc_id, …])` rejects None and empty string, plus
`assert doc_id is not None`). No code change needed.

`get_qdrant_client()` with a module-level `anyio.Lock`. Double-checked
locking keeps the steady-state hot path lock-free. Without this,
parallel cold-start callers could all enter the init block and run
`_backfill_doc_id_to_string` + `_ensure_payload_indexes` redundantly
(idempotent, but noisy). Pattern matches `auth/storage.py:2071`.

behavior with three tests covering the float-warning path (the gap
called out in the review), the str/None silent-skip paths, and the
int-grouping happy path.

Verification:
- ruff check / format: clean
- ty check -- nextcloud_mcp_server: clean
- uv run pytest tests/unit/: 969 passed

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-09 15:53:33 +02:00
Chris CoutinhoandClaude Opus 4.7 a27f738dbf fix(vector): tighten get_chunk_bbox_and_page_from_qdrant doc_id to str
🔴 Blocking finding from PR #773 latest review:
`get_chunk_bbox_and_page_from_qdrant` (`search/context.py:199`) still
declared `doc_id: int | str` and passed the raw value into
`MatchValue(value=doc_id)` at lines 239 and 256 without `str()`
coercion. After this branch's startup backfill normalises every Qdrant
`doc_id` payload to a string, an `int` filter would silently match zero
points — the function would return `(None, None)` instead of the
chunk bbox / page, and PDF highlight overlays would fail in production.

Take option 2 from the reviewer's two suggestions (annotation
tightening over inline coercion): the producer side of this PR has
already narrowed every other `doc_id` annotation to `str`, so this
function is the last hold-out. Pushing the contract into the type
system means `ty` will catch any future regression at the call site.

Production callers in `api/visualization.py` and `auth/viz_routes.py`
already pass `doc_id` (str) verbatim after the recent merge with
master's chunk_index-first refactor, so no caller-side changes needed.

Update the 9 calls in `tests/unit/test_chunk_bbox_helper.py` to use
string literals (`"42"` / `"99"` / `"1"`) instead of integers. The
mock doesn't validate `MatchValue` value types, so the tests passed
with stale int doc_ids today — but they were exercising a path
production no longer takes.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-09 14:32:33 +02:00
Chris Coutinho 9720a7e4fe Merge remote-tracking branch 'origin/master' into fix/qdrant-doc-id-keyword-index 2026-05-09 13:48:21 +02:00
Chris CoutinhoandClaude Opus 4.7 7ef8760d27 fix(chunk-context): address PR #767 review — extract bbox helper, fix page_number overwrite
Resolves both 🟡 important issues from the latest review:

1. `page_number` was unconditionally overwritten in `viz_routes.py:696` even
   when Qdrant's payload lacked the field, clobbering the value resolved
   from `chunk_context.page_number`. The new helper returns each field
   independently and both call sites only overwrite via `is not None`
   guards, matching the existing logic in `visualization.py`.

2. The ~60-line `if chunk_index is not None: ... else: ...` Qdrant scroll
   block was duplicated between `api/visualization.py` and
   `auth/viz_routes.py`. Extracted into `get_chunk_bbox_and_page_from_qdrant`
   in `search/context.py` alongside the existing private `_get_chunk_*_from_qdrant`
   helpers; both routes now share ~12 lines of caller code.

New unit tests at `tests/unit/test_chunk_bbox_helper.py` cover the indexed
and offset paths, the `(bbox, None)` regression case, and graceful
degradation on Qdrant strict-mode 400 (which also closes nit #4).

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-09 13:29:22 +02:00
Chris CoutinhoandClaude Opus 4.7 c780f96d2b fix(chunk-context): address PR #767 review — drop dead PDF branch, redundant alias, add boundary tests
- Remove unreachable doc_type=="file" branch (and pymupdf/pymupdf4llm
  imports) from _fetch_document_text in search/context.py — the file
  path is short-circuited in get_chunk_with_context before reaching it.
- Drop the redundant `username = request.user.display_name` alias in
  auth/viz_routes.py; both Qdrant scroll filters now reference user_id
  consistently with the rest of the handler.
- Add TestAdjacentChunkBoundary in tests/unit/test_chunk_context_offset_gate.py
  covering chunk_index=0 (before-fetch gate closed) and
  chunk_index=total_chunks-1 (after-fetch gate closed) — the two
  off-by-one boundaries previously untested.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-09 00:07:51 +02:00
Chris CoutinhoandClaude Opus 4.7 47b0b737b6 fix(chunk-context): address PR #767 round-3 review — gate readability + legacy-fallback comment
- search/context.py: rename triple-negation gate condition to
  `skip_offset_lookup` named boolean for readability; convert new
  logger.warning to lazy %-style per repo convention.
- api/visualization.py, auth/viz_routes.py: add comment on the offset-only
  Qdrant scroll branch noting it is a legacy path for pre-astrolabe#75
  clients and degrades gracefully on Qdrant Cloud strict mode.

Reviewer item #2 (extracting the duplicated scroll block into a shared
helper) deferred to a follow-up issue per the reviewer's "not blocking"
framing.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-08 23:21:30 +02:00
Chris CoutinhoandClaude Opus 4.7 92b2d50cd7 fix(vector): address PR review round 3 — sentinel guard, skip indexed fields, narrow types
- Add a fixed-UUID sentinel point written after a successful doc_id
  backfill so subsequent restarts retrieve it and short-circuit the
  O(N) scroll. Sentinel has no user_id/doc_id/doc_type payload so
  production search filters never see it.
- Pre-fetch payload_schema in _ensure_keyword_payload_indexes and
  silently skip fields that are already indexed; the "Created KEYWORD
  payload index" INFO log fires only on actual creation.
- Narrow stale `int | str` doc_id annotations to `str` across
  search/verification.py (BatchVerifier return type, per-verifier
  accessible sets, by_type / accessible_by_type / inaccessible
  collections); drop the now-redundant `type(d).__name__` prefix in
  the dropped-docs log.
- Align the backfill log message with the PR description's
  "Running doc_id backfill" promise; add a caller cross-reference to
  the wait=True comment.
- Fix _get_file_path_from_qdrant docstring (file_id is str, not numeric).
- Convert legacy `id=1` to `id="1"` in test_search_result.py to match
  the SearchResult.id: str annotation.

Three new unit tests cover sentinel-found, sentinel-written, and
skip-existing-index branches; existing backfill tests pass dimension
and explicit retrieve.return_value=[] for the no-sentinel path.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-08 22:59:46 +02:00
Chris CoutinhoandClaude Opus 4.7 45da876cf5 fix(chunk-context): propagate chunk_index=None through ChunkContext
Addresses the deferred half of PR #767 review issue 2: instead of just
documenting the "0/N misreport" with a logger.warning, propagate the
caller's None for chunk_index through the dataclass, position markers,
and response builders so callers can distinguish "unknown position"
from "actually chunk 0".

Changes:
- ChunkContext.chunk_index: int → int | None
- _insert_position_markers: chunk_index parameter is int | None; when
  None, renders "Chunk ?/N" instead of "Chunk 1 of N"
- get_chunk_with_context: drops the effective_chunk_index local entirely.
  Passes chunk_index (may be None) directly into both ChunkContext and
  _insert_position_markers, in both the Qdrant fast path and the
  doc-text fallback.
- Fast path: when chunk_index is None and chunk_text was retrieved via
  the offset lookup (notes/cards), skip the adjacent-chunk fetch.
  Index arithmetic from a default 0 would query the chunks at positions
  -1 and 1 even when the actual chunk is, say, 5/20 — silently producing
  wrong "before"/"after" text. Mark both sides as truncated instead.
- Drop the now-redundant logger.warning in the doc-text fallback (the
  response correctly communicates the unknown state via chunk_index=None).

Both existing response builders (`api/visualization.py:657` and
`auth/viz_routes.py:717`) already serialise `chunk_context.chunk_index`
unconditionally; `None` becomes JSON `null`. No route changes needed.

Adds 5 regression tests:
- ChunkContext.chunk_index propagates as None in fast path
- ChunkContext.chunk_index propagates as None in doc-text fallback
- Fast path with chunk_index renders "Chunk N of M" correctly
- _insert_position_markers renders "?/N" for None chunk_index
- _insert_position_markers renders explicit index when supplied

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-08 22:16:00 +02:00
Chris CoutinhoandClaude Opus 4.7 51c1d42ea3 fix(chunk-context): address PR #767 round-2 review — gate, parity, doc
Latest reviewer comment flagged five items on top of the original PR. This
commit addresses every one:

🟡 1. Skip the offset-based Qdrant fallback for `doc_type=file` when
   `chunk_index` is supplied. Qdrant Cloud's strict mode rejects unindexed
   filter fields with HTTP 400, which `_get_chunk_from_qdrant` catches and
   logs at `logger.error` — masking real Qdrant problems in monitoring.
   Notes/cards keep the offset fallback (cheap, useful for legacy data).

🟡 2. Add a `logger.warning` and clarifying inline comment in the doc-text
   fallback path when `chunk_index` is None — surfaces the pre-existing
   "0/N misreport" so callers can detect it. Type-nullability propagation
   is deferred to a follow-up (out of scope for this hotfix).

🟢 3. Simplify `if chunk_text and doc_id_int is not None:` →
   `if chunk_text:` with an inner `assert doc_id_int is not None` for
   `ty` narrowing. The outer second clause was dead.

🟢 4. Add `doc_type` `FieldCondition` to the offset-based image lookup in
   both `visualization.py` and `viz_routes.py` for parity with the
   `chunk_index` branches.

🟢 5. Inline the `chunk_filter` local in `visualization.py` directly into
   the `must=[]` list (matches `viz_routes.py` style).

Adds `tests/unit/test_chunk_context_offset_gate.py` with three regression
tests covering the gate matrix: (file, with-index → skip offset),
(note, with-index → still tries offset), (file, no-index → still tries
offset). Lives at top-level rather than `tests/unit/search/` to side-step
a pre-existing circular-init issue in `nextcloud_mcp_server.search`.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-08 21:28:50 +02:00
Chris CoutinhoandClaude Opus 4.7 6aba589a6e fix(vector): address PR review — wait=True backfill, batched writes, search helper
Addresses reviewer feedback on PR #773:

- Backfill set_payload now uses wait=True to avoid a race where
  _ensure_keyword_payload_indexes builds the KEYWORD index before
  fire-and-forget writes have committed, leaving int payloads
  invisible to filters.
- Batch points sharing the same int doc_id into a single set_payload
  call (one document → many chunks → one round-trip instead of N).
- Drop _has_int_doc_id_sample short-circuit. The sample's false-negative
  window (clean first 256 results, ints further in) is gone; full scroll
  is the dominant cost on first run anyway.
- Simplify _ensure_keyword_payload_indexes: the "already exists" 400
  branch was dead code (Qdrant returns 200 on identical re-create); any
  400 now logs a warning and continues.
- search/context.py: comment the broadened file-type guard. Add explicit
  not doc_id.isdigit() checks at the top of note/news_item/deck_card
  branches in _fetch_document_text so malformed payloads surface as
  warnings instead of being swallowed by the broad except.

Also extracts build_search_result_from_point into search/algorithms.py
to deduplicate the 71-line payload-extraction loop shared by
SemanticSearchAlgorithm and BM25HybridSearchAlgorithm. This fixes
SonarQube's quality-gate failure (4.0% new-code duplication, max 3%).

Test coverage:
- 7 new unit tests for build_search_result_from_point covering missing
  payload, note/file/deck_card metadata, int doc_id coercion, and
  metadata_extras merging.
- Replace _has_int_doc_id_sample tests with clean-collection no-op and
  per-batch grouping tests.
- Update set_payload assertions from wait=False to wait=True.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-08 21:14:28 +02:00
Chris CoutinhoandClaude Opus 4.7 8457c427a5 fix(chunk-context): address PR #767 review — doc_type filter parity + tests
- Add `doc_type` FieldCondition to the chunk_index-path highlighted-image
  Qdrant filter in both `api/visualization.py` and `auth/viz_routes.py`,
  matching the shape of `_get_chunk_by_index_from_qdrant`. Safe today (the
  block is guarded by `doc_type == "file"` and Nextcloud file IDs are
  globally unique) but prevents a latent bug if other doc types start
  storing highlighted images.
- Demote `viz_routes.py` `ValueError` log from `error` to `warning` (lazy
  %-style) — `_parse_int_param` raises on user-supplied bad input, which
  is a 400 not a server error and shouldn't pollute error logs.
- Hoist `effective_chunk_index` to compute once at the top of
  `get_chunk_with_context`, removing two duplicate assignments.
- Add `test_file_doc_type_qdrant_miss_yields_fast_404` to the management
  endpoint tests, locking in the proxy-timeout fix contract.
- Add `tests/unit/test_viz_routes_chunk_context.py` mirroring management
  coverage for the OAuth-session route: param forwarding (chunk_index /
  total_chunks), `doc_type=file` fast 404, and 400 on invalid int params.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-08 20:50:27 +02:00
Chris CoutinhoandClaude Opus 4.7 719b3b5034 fix(vector): normalize doc_id to str + add Qdrant keyword payload indexes
Production was logging two cascading classes of Qdrant errors against the
welcomed-malamute deployment:

1. HTTP 400 — "Bad request: Index required but not found for \"doc_id\" of
   one of the following types: [keyword]". The collection was created via
   create_collection() with no payload indexes, so any FieldCondition
   filter on doc_id failed at the Qdrant layer (placeholder writes/reads,
   eviction, search context lookups).

2. Compounding the missing index, producers wrote a mix of int and str
   doc_ids: webhook_parser stringified node_id, scanner stringified note
   IDs, news IDs, and deck card IDs — but the file scanner passed the
   numeric file_id through unchanged. A keyword index would not have
   covered both kinds even if it had existed.

This change:

- Normalizes doc_id to str at every producer site (scanner.py:459,
  DocumentTask.doc_id, indexed_*_ids reads from Qdrant).
- Tightens str|int annotations to str across placeholder.py,
  eviction.py, search/verification.py, search/context.py,
  SearchResult.id, and the auth/api visualization endpoints.
- Defensive str() coercion on doc_id reads in semantic.py /
  bm25_hybrid.py / vector/visualization.py for the transition window
  before the backfill runs.
- Adds an idempotent startup migration in get_qdrant_client():
  - _ensure_keyword_payload_indexes creates KEYWORD indexes for
    doc_id, user_id, and doc_type (tolerates "already exists" 400s).
  - _backfill_doc_id_to_string scrolls the collection once and rewrites
    int doc_ids to str. Skipped after a quick sample shows no legacy
    int payloads.
- Public API preserved: SemanticSearchResult.id stays int via explicit
  int(r.id) narrowing in server/semantic.py — surfaces a TypeError with
  actionable context if a future doc_type ships non-numeric ids.
- Documents the startup migration in docs/configuration.md.

Tests: 11 new unit tests in tests/unit/vector/test_qdrant_client.py
covering happy path / already-exists / unrelated-400 for the index
helpers, and sample-skip / mixed-batch rewrite / payload=None edge cases
for the backfill. 889 unit tests pass.

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-08 19:30:51 +02:00
Chris CoutinhoandClaude Opus 4.7 90458b6f08 fix(chunk-context): use indexed chunk_index lookup, fix close-after-use bug
Two related bugs surfaced in production while viewing chunks from the
Astrolabe frontend on the AWS-hosted MCP server:

1. PyMuPDF document closed: in _fetch_document_text the fallback path
   referenced pdf_doc.page_count after pdf_doc.close(), raising
   "document closed" and returning None. The slow PDF re-parse already
   completed but its result was discarded. Capture page_count into a
   local before close().

2. Slow/fragile chunk lookup: get_chunk_with_context filtered Qdrant by
   (chunk_start_offset, chunk_end_offset). Those fields are not part of
   the always-indexed payload schema, and with strict_mode enabled they
   yield 400 errors. Even with manually-added indexes the filter is
   fragile if a doc is re-chunked. Switch to chunk_index (always
   indexed) as the primary lookup key, falling back to offset-based
   lookup when callers don't supply it.

Plumb chunk_index/total_chunks through both the management API
(api/visualization.py) and the OAuth viz route (auth/viz_routes.py).
Apply the same change to the highlighted-image lookup so all four
chunk-context Qdrant queries prefer the indexed field.

Skip the slow PDF re-parse fallback entirely for files: when both the
chunk_index and offset Qdrant lookups miss, re-downloading and
re-parsing the source PDF won't find the chunk either, and routinely
exceeds 30s on large documents - which is the proxy timeout in
Astrolabe. Notes/cards keep the document-fetch fallback (cheap).

Removes dead code (_get_file_path_from_qdrant) that was only used by
the now-unreachable file fallback path.

Companion change in the Astrolabe app passes chunk_index from search
results through to the new endpoint params.

---

_This PR was generated with the help of AI, and reviewed by a Human_

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-07 10:58:48 +02:00
Chris CoutinhoandClaude Opus 4.6 a11ae9c027 refactor: enforce PLC0415 (import-outside-top-level) for source code
Enable ruff PLC0415 rule for all source files (tests excluded via
per-file-ignores). Move 136 inline imports to top-level across 33 files.
8 imports suppressed with noqa for legitimate reasons: circular
dependencies (client/__init__.py, context.py), optional dependency
guards (app.py document processors, auth/userinfo_routes.py), and
post-env-setup imports (smithery_main.py).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-20 08:04:50 +01:00
Chris Coutinho 056414752e fix(mcp): Move all imports to the top of modules 2025-12-26 10:05:27 -06:00
Chris CoutinhoandClaude Sonnet 4.5 e4f3beee01 fix: resolve type checking warnings for CI
- Add type casts for Starlette app state access
- Add assertions for cipher, card, board, stack after initialization
- Add None checks for XML element text attributes
- Handle __package__ being None in tracing setup
- Fix TokenBrokerService initialization to use storage credentials

Resolves 42 type warnings from ty-check, enabling CI linting to pass.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2025-12-18 00:44:58 +01:00
Chris CoutinhoandClaude Sonnet 4.5 e0320e761c perf(deck): optimize card lookup by storing board_id/stack_id in metadata
Addresses reviewer feedback on PR #395 about O(n²) performance issue.

Changes:
- scanner.py: Add metadata field to DocumentTask with board_id/stack_id
- scanner.py: Populate metadata during deck card scanning (both initial and incremental sync)
- processor.py: Use metadata for O(1) card lookup via get_card() API when available
- processor.py: Fallback to iteration for legacy data without metadata
- context.py: Add _get_deck_metadata_from_qdrant() helper to retrieve metadata from Qdrant
- context.py: Use metadata for fast path lookup in chunk context expansion
- context.py: Add user_id parameter to _fetch_document_text() for metadata retrieval

Performance Impact:
- Before: O(boards × stacks × cards) iteration for each card lookup
- After: O(1) direct API call using stored board_id/stack_id
- Graceful degradation: Falls back to iteration for legacy data

Testing:
- All existing integration tests pass (test_deck_vector_search.py)
- Type checking passes with no new errors

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2025-12-14 00:23:12 +01:00
Chris CoutinhoandClaude Sonnet 4.5 20404cf3f2 feat(vector): add Deck card vector search with visualization support
Adds comprehensive vector search support for Nextcloud Deck cards,
including semantic search indexing, chunk preview in the vector viz UI,
and proper deep linking to cards.

**Vector Search Indexing**
- Add deck_card scanning in scanner.py (scan_deck_cards function)
- Index cards from non-archived, non-deleted boards
- Store metadata: board_id, board_title, stack_id, stack_title, card_type, duedate, owner
- Content structure: title + "\n\n" + description (matches indexing format)
- Incremental sync based on lastModified timestamp
- Deletion tracking with grace period

**Vector Visualization Support**
- Add deck_card handler in context.py for chunk preview expansion
- Include board_id in search result metadata (bm25_hybrid.py, semantic.py)
- Expose metadata in viz_routes.py JSON responses
- Update vector-viz.js to construct proper Deck URLs: /apps/deck/board/{board_id}/card/{card_id}
- Update vector_viz.html filter label from "Deck" to "Deck Cards"

**Bug Fixes**
- Skip soft-deleted boards (deletedAt > 0) to prevent 403 Forbidden errors
- Applies to scanner, processor, and context expansion code paths
- Deck API returns deleted boards but rejects stack access with 403

**Testing**
- Add integration tests in test_deck_vector_search.py:
  - test_deck_card_semantic_search: Filtered search with doc_type="deck_card"
  - test_deck_card_appears_in_cross_app_search: Cross-app search includes deck cards
  - test_deck_card_chunk_context: Chunk context fetching for viz preview

**Documentation**
- Update README.md: Add Deck cards to semantic search feature list
- Update semantic-search-architecture.md: Document deck_card support
- Update nc_semantic_search tool documentation

**Type Safety**
- Fix type narrowing for page_boundaries (could be None) using cast()
- Fix scanner.py payload None check for type safety

Resolves vector search for Deck cards across indexing, search, and visualization.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
2025-12-13 23:51:18 +01:00
Chris CoutinhoandClaude Opus 4.5 9d0a993c2a feat(vector-viz): add news_item support for links and chunk expansion
Add support for news_item document type in the vector visualization page:

- Add "News" checkbox to document type filter options
- Add URL handler to link news items to /apps/news/item/{id}
- Add content fetching for news items in chunk context expansion

This enables users to search and view news articles in the vector
visualization, with clickable links back to Nextcloud News and the
ability to expand chunks to see full article context.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
2025-12-13 21:34:47 +01:00
Chris Coutinho a62a007c87 feat: Add context expansion to semantic search with chunk overlap removal
Implements optional context expansion for semantic search results that
fetches adjacent chunks (N-1 and N+1) from Qdrant to provide before/after
context. Removes configurable chunk overlap (default 200 chars) to avoid
duplicate text appearing in both context and excerpt.

Key changes:
- Add include_context and context_chars parameters to nc_semantic_search
  and nc_semantic_search_answer tools
- Implement Qdrant cache fast path for chunk retrieval (avoids re-fetching
  and re-parsing documents, especially important for PDFs)
- Add _get_chunk_by_index_from_qdrant() to fetch adjacent chunks
- Remove chunk overlap from before_context (last N chars) and after_context
  (first N chars) to prevent duplicate text
- Fetch context in parallel with anyio.Semaphore (max 20 concurrent)
- Pass through page_number from SearchResult to SemanticSearchResult
- Remove document-level deduplication (keep chunk-level dedup from algorithm)

Context expansion is opt-in via include_context=true parameter. When enabled:
- Populates has_context_expansion, marked_text, before_context, after_context
- Adds truncation flags when context exceeds context_chars limit
- Falls back to document fetch for legacy data with truncated excerpts

Related: nextcloud_mcp_server/search/context.py:87-382,
         nextcloud_mcp_server/server/semantic.py:161-255
2025-11-21 01:02:22 +01:00
Chris CoutinhoandClaude d67aa6ae5c fix: Align PDF text extraction between indexing and context expansion
This commit fixes two critical issues with PDF processing:

1. **Text extraction mismatch (context expansion bug)**:
   - Indexing used pymupdf4llm.to_markdown() producing markdown text
   - Context expansion used page.get_text() producing plain text
   - Different text formats caused character offset misalignment
   - Search would find correct chunk, but expansion showed wrong section
   - Fixed by making context.py use pymupdf4llm.to_markdown() consistently

2. **Diagnostic logging for page number assignment**:
   - Added logging to verify page_boundaries exist in metadata
   - Added logging to verify assign_page_numbers() assigns values
   - Helps diagnose why page numbers show as null in search results

3. **mime_type storage bug**:
   - Fixed incorrect field reference in processor.py:405
   - Was using file_metadata.get("content_type", "")
   - Should use content_type from WebDAV response

Changes:
- nextcloud_mcp_server/search/context.py: Use pymupdf4llm.to_markdown()
  for PDF text extraction to match indexing method
- nextcloud_mcp_server/vector/processor.py: Add diagnostic logging for
  page boundaries and assignment, fix mime_type storage
- tests/unit/client/test_webdav.py: Fix import sorting

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-20 13:57:50 +01:00
Chris Coutinho d0691d5aa0 feat: Switch files to use numeric IDs with file_path resolution
- scanner.py: Use file_info['id'] as doc_id instead of file_path
- scanner.py: Pass file_path in DocumentTask for content retrieval
- processor.py: Store file_path in Qdrant payload for later lookup
- context.py: Add _get_file_path_from_qdrant() to resolve file_id → file_path
- context.py: Update get_chunk_with_context() to handle file ID resolution

This makes the system resilient to file renames since file IDs are stable
identifiers in Nextcloud, while file paths can change.
2025-11-20 12:00:47 +01:00
Chris CoutinhoandClaude f1610bbd2e fix: Reconstruct full content for notes to match indexed offsets
Notes are indexed as "{title}\n\n{content}" in processor.py but were
being retrieved as just content during chunk expansion, causing
chunk_start_offset and chunk_end_offset to be misaligned.

This fix reconstructs the full content structure when fetching notes
for chunk expansion, ensuring the displayed chunks match the excerpts
shown in search results.

Fixes chunk/excerpt mismatch reported in vector visualization.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-20 11:33:12 +01:00
Chris CoutinhoandClaude 327d843f64 feat: Implement per-chunk vector visualization with context expansion
Major improvements to vector visualization page:
- Refactor PCA to display individual chunks instead of averaged documents
- Add context expansion module for fetching surrounding text from notes and PDFs
- Update deduplication to use (doc_id, doc_type, chunk_start, chunk_end) keys
- Fix Alpine.js rendering with chunk-specific keys including offsets
- Refactor authentication helper to return NextcloudClient for better reuse
- Add async context manager support to NextcloudClient

Technical details:
- viz_routes.py: Fetch specific chunk vectors instead of averaging per document
- context.py: New module supporting both notes and PDF text extraction via PyMuPDF
- search algorithms: Extract page_number, chunk_index, total_chunks from Qdrant
- vector-viz.js/html: Use chunk positions in expansion tracking keys

This enables users to see which specific chunks match their query
and view them with surrounding context in the PCA visualization.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-20 11:22:20 +01:00