Commit Graph
64 Commits
Author SHA1 Message Date
Chris CoutinhoandClaude Opus 4.8 b779627fa6 fix(observability): address third review round
Remaining items from the PR #831 Claude review:

- processor span symmetry: add "vector_sync.total_chars" to the sparse
  embedding span (already on the dense span) and drop the redundant
  "embedding.batch_size" attribute from both spans — it always equalled
  vector_sync.chunk_count and would mislead once batching is split.
- metrics: document the deliberate "throughput counts only on full success"
  contract in record_document_parse (partial extractions flagged
  success=False are counted as a parse-error but never inflate
  pages/chars/bytes throughput).
- config: extract _detect_base_provider() -> (family, model) as the single
  source of truth for the provider-detection priority chain, shared by
  get_embedding_model_name() and get_embedding_provider_family(). Preserves
  the intentional gateway asymmetry (only the family method short-circuits).
- base.py: Optional[...] -> PEP 604 `... | None`; drop now-unused import.

Behavior unchanged (get_embedding_* outputs covered by test_config.py).

Refs Deck #175, PR #831.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-03 02:01:28 +02:00
Chris CoutinhoandClaude Opus 4.8 68c9e20636 fix(observability): address second review round
- Failed deletes no longer bump astrolabe_documents_indexed_total: the outer
  except in process_document now gates doc_type on operation != "delete", so a
  delete error is counted as processed-error but not as an indexing event.
  Added test_failed_delete_is_processed_but_not_indexed.
- registry parse span: pass record_exception=True explicitly (matches
  instrument_tool) and add a structured logger.warning on the parse-error path
  (processor/tier/byte_size/duration_ms) for a Loki-aggregatable failed-parse
  signal.
- test_error_does_not_increment_throughput: snapshot-before/delta pattern
  instead of absolute 0.0 (counters are global singletons).
- config: document the deliberate gateway asymmetry between
  get_embedding_model_name() (no gateway branch) and
  get_embedding_provider_family() (short-circuits on gateway).
- Cleanup in touched scope: narrow `except (HTTPStatusError, Exception)` to
  `except Exception` (drop now-unused import); convert registry signatures from
  Optional[...] to `... | None`.

Refs Deck #175, PR #831.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-02 21:09:50 +02:00
Chris CoutinhoandClaude Opus 4.8 5d205fcaab feat(observability): astrolabe_* metrics + traces for the document pipeline
Make per-tier bottlenecks in the document-processing pipeline
(scan -> fetch -> parse -> chunk -> embed -> Qdrant upsert) visible via
metrics, traces, and structured logs. Today the document_processors layer
emits only a logger.info line: no metric, no span, and page counts live only
inside a log string. The single processing-duration histogram is unlabeled and
whole-document, so it cannot isolate parse vs embed vs upsert.

New astrolabe_* metric family (distinct from the mcp_* protocol metrics):
- astrolabe_document_parse_{duration_seconds,total} + pages/chars/bytes counters
  recorded at the ProcessorRegistry.process() boundary (covers all current and
  future processors uniformly)
- astrolabe_document_escalation_total (dormant; tiered-pipeline readiness)
- astrolabe_embedding_{duration_seconds,requests_total,chunks_total,chars_total}
- astrolabe_document_chunks_total, astrolabe_documents_indexed_total{source,status}

Tracing: new document_processor.parse child span + enriched embed/chunk span
attributes (provider/model/batch_size/chunk_count). Structured logs gain a
consistent field vocabulary (doc_id, doc_type, processor, tier, pages, chars,
byte_size, chunks, duration_ms, status) so Loki can aggregate without regex.

Tier-readiness: processor/tier are labels from day one and a tier property is
added to DocumentProcessor, so adding docling/OCR/LLM tiers later is additive
(new label values, never new metrics). Tenant comes from the kube namespace
label; mime_type/model are span attributes only (cardinality). Existing
mcp_vector_sync_*/mcp_qdrant_* are left untouched.

Refs Deck #175 (superset of #173 Phase 2). Dashboard/recording-rules follow-up
tracked on #175 for homelab-argocd.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-02 17:46:20 +02:00
Chris CoutinhoandClaude Opus 4.7 665cb9b1eb refactor: convert f-string logging to lazy %-style format (G004)
Sweep all 1676 G004 violations across 112 files, converting
`logger.<level>(f"…{x}…")` to `logger.<level>("…%s…", x)`.

Why: ruff rule G004 was added to pyproject.toml to enforce lazy
%-style logging — defers formatting until the log level is enabled
and lets structured log tooling match the unformatted template.

Conversion preserves rendered output byte-for-byte:
- `{x}` → `%s` + `x`
- `{x!r}` / `{x!s}` / `{x!a}` → `%r` / `%s` / `%a`
- Format specs (`{x:.2f}`, `{x:>10}`) → `%s` + `format(x, 'spec')`
  (printf-style specs aren't 1:1 with Python format specs, so we
  delegate to `format()` to keep identical output)
- Literal `%` → `%%`
- Concatenated f-strings (`f"a {x} " "b"`) flattened
- Trailing kwargs (`exc_info=True`) preserved

Verified:
- `uv run ruff check --select G004` → 0 violations
- `uv run ty check -- nextcloud_mcp_server` → passes
- `uv run pytest tests/unit/` → 1010 passed

Co-Authored-By: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-05-13 01:12:17 +02:00
Chris Coutinho 056414752e fix(mcp): Move all imports to the top of modules 2025-12-26 10:05:27 -06:00
Chris CoutinhoandClaude 8baa07db84 fix: Remove pymupdf.layout.activate() to fix page_chunks behavior
pymupdf.layout.activate() causes pymupdf4llm.to_markdown() to ignore the
page_chunks=True option, returning a single string instead of list[dict].
This broke per-page chunking needed for semantic search indexing.

See: https://github.com/pymupdf/pymupdf4llm/issues/323

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-22 16:58:35 +01:00
Chris CoutinhoandClaude ba8a53803a refactor: Simplify PDF text extraction with single to_markdown call
Replace parallel per-page extraction with single to_markdown(page_chunks=True)
call. This is more efficient as pymupdf4llm can optimize internally for
full-document processing instead of making N separate calls for N pages.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-22 03:52:02 +01:00
Chris CoutinhoandClaude 31fade9730 perf: Optimize PDF processing with parallel extraction and single-render highlights
Phase 1 - PDF Highlighting Optimization:
- Render each page ONCE instead of once per chunk (N chunks = 1 render, not N)
- Use PIL to draw bounding boxes on copied base images (fast) instead of
  re-rendering page via pymupdf (slow)
- Add _find_chunk_bbox() to extract bbox without modifying page

Phase 2 - Parallel Page Extraction:
- Use anyio task group with run_sync() for parallel page extraction
- Each page extracted in separate thread via anyio.to_thread.run_sync()
- Event loop stays responsive during extraction
- Remove obsolete _process_sync() method

Expected improvement: 30-50% reduction in total PDF processing time.

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-22 03:11:56 +01:00
Chris CoutinhoandClaude fffe483c02 fix: Centralize PDF processing and generate separate images per chunk
Previously, pymupdf4llm.to_markdown() was called twice - once in
PyMuPDFProcessor during indexing and again in PDFHighlighter during
visualization. Different image path lengths caused different character
offsets, leading to highlighted pages not matching their chunks.

Also fixed issue where all chunks on the same page showed all highlights
instead of just their own highlight. Now restores original page contents
between chunks using xref stream caching.

Changes:
- Add PDFHighlighter class requiring pre-computed page_boundaries and
  full_text from document processor (no fallback extraction)
- Pass pre-computed data from processor to highlighter
- Extract page-relative portion of chunk text for cross-page chunks
- Add bounding box highlighting using text anchor search
- Run highlight generation in parallel with embedding/BM25
- Cache and restore page contents to isolate highlights per chunk

Results: Highlighting success rate improved from 51% to 95% (121/128).

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-22 02:46:30 +01:00
Chris Coutinho a62a007c87 feat: Add context expansion to semantic search with chunk overlap removal
Implements optional context expansion for semantic search results that
fetches adjacent chunks (N-1 and N+1) from Qdrant to provide before/after
context. Removes configurable chunk overlap (default 200 chars) to avoid
duplicate text appearing in both context and excerpt.

Key changes:
- Add include_context and context_chars parameters to nc_semantic_search
  and nc_semantic_search_answer tools
- Implement Qdrant cache fast path for chunk retrieval (avoids re-fetching
  and re-parsing documents, especially important for PDFs)
- Add _get_chunk_by_index_from_qdrant() to fetch adjacent chunks
- Remove chunk overlap from before_context (last N chars) and after_context
  (first N chars) to prevent duplicate text
- Fetch context in parallel with anyio.Semaphore (max 20 concurrent)
- Pass through page_number from SearchResult to SemanticSearchResult
- Remove document-level deduplication (keep chunk-level dedup from algorithm)

Context expansion is opt-in via include_context=true parameter. When enabled:
- Populates has_context_expansion, marked_text, before_context, after_context
- Adds truncation flags when context exceeds context_chars limit
- Falls back to document fetch for legacy data with truncated excerpts

Related: nextcloud_mcp_server/search/context.py:87-382,
         nextcloud_mcp_server/server/semantic.py:161-255
2025-11-21 01:02:22 +01:00
Chris CoutinhoandClaude b8010270c1 fix: Add async/await, PDF metadata, and type safety fixes
This commit addresses multiple issues with async operations, PDF metadata
extraction, and type safety in document processing and search.

## Async/Await Fixes
- processor.py:259 - Added await for chunker.chunk_text(content)
- processor.py:270 - Added await for bm25_service.encode_batch(chunk_texts)
- tests/unit/test_document_chunker.py - Converted all 12 test methods to async

## PDF Metadata Enhancement
- pymupdf.py:143 - Added file_size metadata extraction
- pymupdf.py:145-206 - Refactored to extract text page-by-page
  - Manually loop through pages instead of using page_chunks=True
  - Generate page_boundaries metadata for precise page tracking
  - Works around pymupdf.layout.activate() breaking page_chunks=True
- processor.py:32-66 - Added assign_page_numbers() helper function
  - Assigns page numbers to chunks based on overlap with page boundaries
  - Handles chunks spanning multiple pages
- processor.py:298-300 - Call assign_page_numbers() for PDF files

## Type Safety Fixes
- bm25_hybrid.py:184 - Removed int() conversion of doc_id
- semantic.py:131 - Removed int() conversion of doc_id
- viz_routes.py:275 - Removed int() conversion of doc_id
- Added comments documenting that doc_id can be int (notes) or str (file paths)

## Testing
- All 18 tests passing (12 unit + 6 integration)
- No type errors in modified files
- Container logs show successful processing
- Vector viz searches working correctly

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-11-20 02:37:07 +01:00
Chris Coutinho 6cccd92b3b build: Add type checking 2025-11-05 15:19:55 +01:00
Chris Coutinho a36038422b feat: Add text processing background worker for telling client about progress 2025-10-25 19:52:45 +02:00
Chris CoutinhoandClaude 2147fc1696 refactor: Transform document parsing into pluggable processor architecture
Refactors PR #190's hardcoded Unstructured.io integration into a flexible,
extensible plugin system supporting multiple text extraction engines.

- **`DocumentProcessor` ABC**: Abstract interface for all processors
- **`ProcessorRegistry`**: Central registry for discovery and routing
- **`ProcessingResult`**: Standardized output format across processors

- **`UnstructuredProcessor`**: Refactored from `UnstructuredClient`
- **`TesseractProcessor`**: Local OCR for images (lightweight alternative)
- **`CustomHTTPProcessor`**: Generic wrapper for custom HTTP APIs

- New `get_document_processor_config()` returns structured config
- Supports enabling/disabling individual processors
- Per-processor configuration via environment variables
- **Breaking Change**: `ENABLE_UNSTRUCTURED_PARSING` replaced with:
  - `ENABLE_DOCUMENT_PROCESSING=true/false` (master switch)
  - `ENABLE_UNSTRUCTURED=true/false` (per-processor)
  - `ENABLE_TESSERACT=true/false`
  - `ENABLE_CUSTOM_PROCESSOR=true/false`

- `parse_document()` now uses `ProcessorRegistry`
- Auto-selects appropriate processor based on MIME type
- Processor priority system (Unstructured=10, Tesseract=5, Custom=1)

- `initialize_document_processors()` registers processors at startup
- Integrated into both BasicAuth and OAuth lifespans
- Graceful degradation if processors fail to initialize

```env
ENABLE_DOCUMENT_PROCESSING=false

ENABLE_UNSTRUCTURED=false
UNSTRUCTURED_API_URL=http://unstructured:8000
UNSTRUCTURED_STRATEGY=auto  # auto|fast|hi_res
UNSTRUCTURED_LANGUAGES=eng,deu

ENABLE_TESSERACT=false
TESSERACT_LANG=eng

ENABLE_CUSTOM_PROCESSOR=false
CUSTOM_PROCESSOR_URL=http://localhost:9000/process
CUSTOM_PROCESSOR_TYPES=application/pdf,image/jpeg
```

- **Removed**: `tests/test_unstructured_config.py` (legacy tests)
- **Added**: `tests/unit/test_document_processor_config.py`
  - 7 unit tests for new config system
  - Tests individual and multi-processor configurations

- **Added**:
  - `nextcloud_mcp_server/document_processors/__init__.py`
  - `nextcloud_mcp_server/document_processors/base.py`
  - `nextcloud_mcp_server/document_processors/registry.py`
  - `nextcloud_mcp_server/document_processors/unstructured.py`
  - `nextcloud_mcp_server/document_processors/tesseract.py`
  - `nextcloud_mcp_server/document_processors/custom_http.py`
  - `tests/unit/test_document_processor_config.py`

- **Modified**:
  - `nextcloud_mcp_server/config.py` - New plugin config system
  - `nextcloud_mcp_server/app.py` - Processor initialization
  - `nextcloud_mcp_server/utils/document_parser.py` - Uses registry
  - `nextcloud_mcp_server/server/webdav.py` - Import updates
  - `env.sample` - New configuration format
  - `docker-compose.yml` - (profile changes from previous work)

- **Removed**:
  - `nextcloud_mcp_server/client/unstructured_client.py` - Replaced by UnstructuredProcessor
  - `tests/test_unstructured_config.py` - Replaced with new tests

 **Extensible**: Add processors without modifying core code
 **Testable**: Mock processors for unit tests
 **Configurable**: Enable only needed processors
 **Flexible**: Choose fast (Tesseract) vs accurate (Unstructured)
 **Opt-in**: Disabled by default, no mandatory dependencies

Users upgrading from PR #190 need to update environment variables:
```bash
ENABLE_UNSTRUCTURED_PARSING=true

ENABLE_DOCUMENT_PROCESSING=true
ENABLE_UNSTRUCTURED=true
```

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>
2025-10-25 19:28:35 +02:00